Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10840
         (766 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

M93691-1|AAA29366.1|  574|Anopheles gambiae protein ( Anopheles ...    25   1.9  
AY578809-1|AAT07314.1|  358|Anopheles gambiae Sloan-Kettering In...    24   4.5  

>M93691-1|AAA29366.1|  574|Anopheles gambiae protein ( Anopheles
           gambiae RT2 retroposon. ).
          Length = 574

 Score = 25.4 bits (53), Expect = 1.9
 Identities = 13/51 (25%), Positives = 25/51 (49%)
 Frame = +1

Query: 49  NQLQKRKKVTNNDEIAGQMPVIKRRKITEQQVQRPESKGPLVLFPSDSEDD 201
           +Q Q++++      +AG     + R   +QQ+QR     P ++  S SE +
Sbjct: 303 HQQQQQQRQPQRQAVAGSQQQQQERMQQQQQLQRKRKPRPDIIEVSPSEGE 353


>AY578809-1|AAT07314.1|  358|Anopheles gambiae Sloan-Kettering
           Institute proto-oncogeneproduct protein.
          Length = 358

 Score = 24.2 bits (50), Expect = 4.5
 Identities = 15/40 (37%), Positives = 17/40 (42%)
 Frame = +1

Query: 541 GGARTSTICKVLEADRGPMEF*GPPTKRLPCTLTPDVRSG 660
           GG R  +    L   R PM   GPP   +P   TPD   G
Sbjct: 76  GGGRAGSDEDELPQPRQPM---GPPVPGVPIMTTPDPDCG 112


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 747,210
Number of Sequences: 2352
Number of extensions: 15490
Number of successful extensions: 33
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 32
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 33
length of database: 563,979
effective HSP length: 63
effective length of database: 415,803
effective search space used: 79418373
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)