Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10840
         (766 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U39850-6|AAM45366.1| 1081|Caenorhabditis elegans Polyq (poly glu...    33   0.17 
U39850-3|AAM45367.2| 1647|Caenorhabditis elegans Polyq (poly glu...    33   0.17 
AC006712-10|AAK39322.2|  273|Caenorhabditis elegans Hypothetical...    30   2.1  
AC025716-21|AAT39978.1|  586|Caenorhabditis elegans Hypothetical...    29   2.7  
AC025716-20|AAT39977.2|  946|Caenorhabditis elegans Hypothetical...    29   2.7  
Z93389-5|CAI79177.1|  212|Caenorhabditis elegans Hypothetical pr...    29   3.6  
Z78066-9|CAN86643.1| 2488|Caenorhabditis elegans Hypothetical pr...    28   6.3  
Z78066-6|CAB51467.1| 2484|Caenorhabditis elegans Hypothetical pr...    28   6.3  
Z78066-4|CAB01522.2| 2607|Caenorhabditis elegans Hypothetical pr...    28   6.3  
AL031629-3|CAA20976.1|  555|Caenorhabditis elegans Hypothetical ...    28   6.3  
Z84574-5|CAB06541.1|  846|Caenorhabditis elegans Hypothetical pr...    28   8.4  

>U39850-6|AAM45366.1| 1081|Caenorhabditis elegans Polyq (poly
           glutamine tract) toxicityenhancer protein 1, isoform a
           protein.
          Length = 1081

 Score = 33.5 bits (73), Expect = 0.17
 Identities = 16/43 (37%), Positives = 23/43 (53%)
 Frame = +2

Query: 545 VRGPQRSARCWKQTAGPWNFRAHPLNDSPALLHPTSVRGQNPV 673
           V+GP R A    Q  GP     HP + + A +H TS+ G +P+
Sbjct: 356 VQGPHRGAPQMAQQPGPHGAAQHPSSGTVAPMHITSLPGNHPL 398


>U39850-3|AAM45367.2| 1647|Caenorhabditis elegans Polyq (poly
           glutamine tract) toxicityenhancer protein 1, isoform b
           protein.
          Length = 1647

 Score = 33.5 bits (73), Expect = 0.17
 Identities = 16/43 (37%), Positives = 23/43 (53%)
 Frame = +2

Query: 545 VRGPQRSARCWKQTAGPWNFRAHPLNDSPALLHPTSVRGQNPV 673
           V+GP R A    Q  GP     HP + + A +H TS+ G +P+
Sbjct: 356 VQGPHRGAPQMAQQPGPHGAAQHPSSGTVAPMHITSLPGNHPL 398


>AC006712-10|AAK39322.2|  273|Caenorhabditis elegans Hypothetical
           protein Y119C1B.1 protein.
          Length = 273

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 18/70 (25%), Positives = 38/70 (54%), Gaps = 5/70 (7%)
 Frame = +2

Query: 107 RSSNDVKSPNNKYSGRR----ARDLSFCSPQTVKTMRDQTLRR-TKMRNHHALPSQEAKE 271
           +S   +KS  ++ +  R    +RD +  S +++K+ RD+  RR +K R  H   +++   
Sbjct: 54  KSRKSMKSKRDRRTSERERKSSRDRNKVSRRSMKSSRDRKSRRSSKDRKSHRSSNRKRDR 113

Query: 272 EEDAKENRKK 301
           E+D ++  +K
Sbjct: 114 EDDVRDGSRK 123


>AC025716-21|AAT39978.1|  586|Caenorhabditis elegans Hypothetical
           protein Y39G10AR.18b protein.
          Length = 586

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 13/41 (31%), Positives = 19/41 (46%)
 Frame = +2

Query: 182 PQTVKTMRDQTLRRTKMRNHHALPSQEAKEEEDAKENRKKK 304
           P+  K +R+Q        +HH   S   K+ E  KE +K K
Sbjct: 77  PKKEKLLREQQDATPASSHHHGASSSSGKDREKEKEKKKNK 117


>AC025716-20|AAT39977.2|  946|Caenorhabditis elegans Hypothetical
           protein Y39G10AR.18a protein.
          Length = 946

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 13/41 (31%), Positives = 19/41 (46%)
 Frame = +2

Query: 182 PQTVKTMRDQTLRRTKMRNHHALPSQEAKEEEDAKENRKKK 304
           P+  K +R+Q        +HH   S   K+ E  KE +K K
Sbjct: 437 PKKEKLLREQQDATPASSHHHGASSSSGKDREKEKEKKKNK 477


>Z93389-5|CAI79177.1|  212|Caenorhabditis elegans Hypothetical
           protein T13F3.8 protein.
          Length = 212

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 13/53 (24%), Positives = 26/53 (49%)
 Frame = +2

Query: 146 SGRRARDLSFCSPQTVKTMRDQTLRRTKMRNHHALPSQEAKEEEDAKENRKKK 304
           +G    +++  +P   +  +++ + +    N  A    E K+EE+ KE  KKK
Sbjct: 51  TGLTTNNVNIGNPAPEEKKKEEKVEKKPEENKEAEKKDEPKKEEEKKEEEKKK 103


>Z78066-9|CAN86643.1| 2488|Caenorhabditis elegans Hypothetical protein
            W06A7.3f protein.
          Length = 2488

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = +1

Query: 112  IKRRKITEQQVQRPESKGPLVLFPSDSEDDER 207
            +KR   TE + Q+ E   P+ +    +EDDE+
Sbjct: 1287 VKRASSTEPKTQKTEPHAPIFIVGQSTEDDEQ 1318


>Z78066-6|CAB51467.1| 2484|Caenorhabditis elegans Hypothetical protein
            W06A7.3c protein.
          Length = 2484

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = +1

Query: 112  IKRRKITEQQVQRPESKGPLVLFPSDSEDDER 207
            +KR   TE + Q+ E   P+ +    +EDDE+
Sbjct: 1287 VKRASSTEPKTQKTEPHAPIFIVGQSTEDDEQ 1318


>Z78066-4|CAB01522.2| 2607|Caenorhabditis elegans Hypothetical protein
            W06A7.3a protein.
          Length = 2607

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = +1

Query: 112  IKRRKITEQQVQRPESKGPLVLFPSDSEDDER 207
            +KR   TE + Q+ E   P+ +    +EDDE+
Sbjct: 1287 VKRASSTEPKTQKTEPHAPIFIVGQSTEDDEQ 1318


>AL031629-3|CAA20976.1|  555|Caenorhabditis elegans Hypothetical
           protein Y106G6D.3 protein.
          Length = 555

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 18/68 (26%), Positives = 31/68 (45%)
 Frame = +2

Query: 101 RCRSSNDVKSPNNKYSGRRARDLSFCSPQTVKTMRDQTLRRTKMRNHHALPSQEAKEEED 280
           R  S N  KS  +  S R  R       ++ +  +  + R+ K+R   +  SQ +K ++ 
Sbjct: 37  RSNSRNSRKSSRSNKSKRSQRS----KRRSAQRKKSSSRRKKKLRKEKSRKSQRSKRKKR 92

Query: 281 AKENRKKK 304
             E RKK+
Sbjct: 93  ESERRKKE 100


>Z84574-5|CAB06541.1|  846|Caenorhabditis elegans Hypothetical
           protein F33E2.6 protein.
          Length = 846

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 23/80 (28%), Positives = 33/80 (41%), Gaps = 4/80 (5%)
 Frame = +1

Query: 514 EPPTRSPRLGGART---STICKVLEADRGPMEF*GPPTKRLPCTLTPDVRSGSKPGQSRG 684
           +P T  PR   + T    T+    EA R  +   GP    +P T+TP+    S       
Sbjct: 705 QPRTAPPRTEVSMTLPPETVPPKTEAPRTEVPMTGPSRTEVPMTVTPETGLSSTVTSKTE 764

Query: 685 VPRSTLQPD-TRRQGVDNTV 741
            P++T +   T R  V  TV
Sbjct: 765 PPKTTTEKRITPRTEVPKTV 784


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,733,492
Number of Sequences: 27780
Number of extensions: 338423
Number of successful extensions: 943
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 897
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 942
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1830096852
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)