Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10840
         (766 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          25   0.77 
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    23   4.1  
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               22   5.4  
DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450 monoo...    22   7.2  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             21   9.5  

>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 25.0 bits (52), Expect = 0.77
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = +1

Query: 655 SGSKPGQSRGVPRSTLQPDTRRQGV 729
           S +K  ++ G+P STL    RR+G+
Sbjct: 483 SANKASKAFGIPSSTLYKIARREGI 507


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 22.6 bits (46), Expect = 4.1
 Identities = 11/45 (24%), Positives = 19/45 (42%)
 Frame = +2

Query: 542 GVRGPQRSARCWKQTAGPWNFRAHPLNDSPALLHPTSVRGQNPVR 676
           GV    +S + ++QT    NF  + +N      H       NP++
Sbjct: 38  GVFSNNKSKKYFEQTLNELNFNLNYVNKGVTYKHTIIEMDSNPIK 82


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 22.2 bits (45), Expect = 5.4
 Identities = 10/13 (76%), Positives = 10/13 (76%), Gaps = 1/13 (7%)
 Frame = +1

Query: 178 FP-SDSEDDERPN 213
           FP S S DDERPN
Sbjct: 104 FPNSSSSDDERPN 116


>DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 517

 Score = 21.8 bits (44), Expect = 7.2
 Identities = 7/10 (70%), Positives = 9/10 (90%)
 Frame = -1

Query: 229 LRPPQSLVSH 200
           LRPPQ ++SH
Sbjct: 125 LRPPQEVISH 134


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 11/35 (31%), Positives = 16/35 (45%)
 Frame = +1

Query: 100  QMPVIKRRKITEQQVQRPESKGPLVLFPSDSEDDE 204
            Q+P   R K    Q+ R   + P+     DS +DE
Sbjct: 1318 QIPESMRSKALIDQLCRNSRRTPVPRLAQDSSEDE 1352


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 206,078
Number of Sequences: 438
Number of extensions: 4461
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 23911269
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)