Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10840
         (766 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g05120.1 68414.m00514 SNF2 domain-containing protein / helica...    33   0.21 
At5g24470.1 68418.m02884 pseudo-response regulator 5 (APRR5) ide...    28   5.9  
At3g19100.1 68416.m02427 calcium-dependent protein kinase, putat...    28   5.9  

>At1g05120.1 68414.m00514 SNF2 domain-containing protein / helicase
           domain-containing protein / RING finger
           domain-containing protein similar to SP|P79051 DNA
           repair protein rhp16 (RAD16 homolog)
           {Schizosaccharomyces pombe}; contains Pfam profiles
           PF00271: Helicase conserved C-terminal domain, PF00176:
           SNF2 family N-terminal domain, PF00097: Zinc finger,
           C3HC4 type (RING finger)
          Length = 833

 Score = 33.1 bits (72), Expect = 0.21
 Identities = 16/46 (34%), Positives = 22/46 (47%)
 Frame = +2

Query: 173 FCSPQTVKTMRDQTLRRTKMRNHHALPSQEAKEEEDAKENRKKKFT 310
           FC P  VKT +    +R K  +  +   +EA   ED K  + KK T
Sbjct: 285 FCGPSAVKTAKQSKQKRKKTSDSSSQQGKEADAGEDKKLKKSKKKT 330


>At5g24470.1 68418.m02884 pseudo-response regulator 5 (APRR5)
           identical to pseudo-response regulator 5 GI:10281006
           from [Arabidopsis thaliana]
          Length = 667

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 16/56 (28%), Positives = 22/56 (39%), Gaps = 2/56 (3%)
 Frame = +3

Query: 504 WPGRTSYEVPAPRGCADLNDLQGVGSRPRAHGILGPTH*TTPLHSYTR--RPFGVK 665
           WPG++SY  P P       D     +   A   L P+  +   H Y+    PF  K
Sbjct: 506 WPGQSSYPTPTPINNIQFRDPNTAYTSAMAPASLSPSPSSVSPHEYSSMFHPFNSK 561


>At3g19100.1 68416.m02427 calcium-dependent protein kinase, putative
           / CDPK, putative similar to calcium/calmodulin-dependent
           protein kinase CaMK3 [Nicotiana tabacum]
           gi|16904226|gb|AAL30820; contains protein kinase domain,
           Pfam:PF00069; contains serine/threonine protein kinase
           domain, INTERPRO:IPR002290
          Length = 599

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 14/40 (35%), Positives = 23/40 (57%)
 Frame = +2

Query: 170 SFCSPQTVKTMRDQTLRRTKMRNHHALPSQEAKEEEDAKE 289
           +F  P   + +RD  LRR K +   ALP+   ++EE+ +E
Sbjct: 88  AFHPPSPARHIRD-VLRRRKEKKEAALPAARQQKEEEERE 126


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,878,761
Number of Sequences: 28952
Number of extensions: 311910
Number of successful extensions: 952
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 912
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 951
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1712086600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)