Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10839
         (688 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.       25   0.58 
EF592539-1|ABQ95985.1|  630|Tribolium castaneum beta-N-acetylglu...    23   2.3  
U09586-2|AAC47271.1|  712|Tribolium castaneum protease, reverse ...    23   3.1  
DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    22   4.1  
EF592537-1|ABQ95983.1|  593|Tribolium castaneum beta-N-acetylglu...    22   5.4  
AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory recept...    22   5.4  
U81040-1|AAB39356.1|  283|Tribolium castaneum TC Deformed protein.     21   7.2  
U81038-1|AAB39355.1|  412|Tribolium castaneum transcription fact...    21   7.2  
EF592536-1|ABQ95982.1|  598|Tribolium castaneum beta-N-acetylglu...    21   7.2  
EF125547-1|ABL73931.1|  255|Tribolium castaneum obstractor D pro...    21   7.2  
AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.           21   7.2  
AJ621748-1|CAF21851.1|  228|Tribolium castaneum zinc finger tran...    21   9.5  

>X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.
          Length = 524

 Score = 25.0 bits (52), Expect = 0.58
 Identities = 14/31 (45%), Positives = 16/31 (51%)
 Frame = +3

Query: 288 NLHPNYENANQETGEKDSNANNNKETSEPLQ 380
           N+    E A +E  E DSN NNNKE     Q
Sbjct: 446 NVEVVQEEAKKE--ESDSNNNNNKEEGNSCQ 474


>EF592539-1|ABQ95985.1|  630|Tribolium castaneum
           beta-N-acetylglucosaminidase FDL protein.
          Length = 630

 Score = 23.0 bits (47), Expect = 2.3
 Identities = 7/16 (43%), Positives = 9/16 (56%)
 Frame = +3

Query: 189 DLPAREGEGWRYGTSQ 236
           D PA  G GW +G  +
Sbjct: 328 DTPAHAGNGWNWGPQE 343


>U09586-2|AAC47271.1|  712|Tribolium castaneum protease, reverse
           transcriptase andRNase H protein.
          Length = 712

 Score = 22.6 bits (46), Expect = 3.1
 Identities = 11/28 (39%), Positives = 16/28 (57%), Gaps = 2/28 (7%)
 Frame = +3

Query: 162 CYRY*GYGTDLPA--REGEGWRYGTSQR 239
           C RY     DL    R+GE WR+G +++
Sbjct: 549 CARYSAATQDLNKLLRKGEKWRWGRNEQ 576


>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
           adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 22.2 bits (45), Expect = 4.1
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = -1

Query: 436 CLTSNDSPVSTFTVS 392
           CL SN + V+T+T S
Sbjct: 678 CLASNSASVTTYTTS 692


>EF592537-1|ABQ95983.1|  593|Tribolium castaneum
           beta-N-acetylglucosaminidase NAG2 protein.
          Length = 593

 Score = 21.8 bits (44), Expect = 5.4
 Identities = 6/13 (46%), Positives = 9/13 (69%)
 Frame = +3

Query: 189 DLPAREGEGWRYG 227
           D P+  G GW++G
Sbjct: 305 DAPSHAGNGWQWG 317


>AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory receptor
           candidate 19 protein.
          Length = 355

 Score = 21.8 bits (44), Expect = 5.4
 Identities = 12/40 (30%), Positives = 17/40 (42%)
 Frame = -3

Query: 419 LSSFNIHSLSYRLL*RFTGLFVIVCIRVFLTCFLIGIFII 300
           L  F +H L    +  F   F+I  I +   C LI +  I
Sbjct: 199 LDYFTLHLLFLPCIYYFYSAFIIFTIHLLFYCVLIILLCI 238


>U81040-1|AAB39356.1|  283|Tribolium castaneum TC Deformed protein.
          Length = 283

 Score = 21.4 bits (43), Expect = 7.2
 Identities = 19/82 (23%), Positives = 35/82 (42%), Gaps = 1/82 (1%)
 Frame = +3

Query: 288 NLHPNYENANQETGEKDSNANNNKETSEPLQQPIGETVNVETGESFEVKHQQNCQ-TTTN 464
           N+ PN +  +        + ++    S    Q +G  + +E   S E     + Q ++TN
Sbjct: 138 NVTPNCDVKSSVCSPGSGHQDSRTSPSGQHLQELG--LRLEDANSDEQDDGDDGQGSSTN 195

Query: 465 ETDDDKLAEEISKQIMIWI*KM 530
             +DD   E   +QI  W+ K+
Sbjct: 196 NDEDDDDEETGDRQIYPWMRKV 217


>U81038-1|AAB39355.1|  412|Tribolium castaneum transcription factor
           Deformed protein.
          Length = 412

 Score = 21.4 bits (43), Expect = 7.2
 Identities = 19/82 (23%), Positives = 35/82 (42%), Gaps = 1/82 (1%)
 Frame = +3

Query: 288 NLHPNYENANQETGEKDSNANNNKETSEPLQQPIGETVNVETGESFEVKHQQNCQ-TTTN 464
           N+ PN +  +        + ++    S    Q +G  + +E   S E     + Q ++TN
Sbjct: 138 NVTPNCDVKSSVCSPGSGHQDSRTSPSGQHLQELG--LRLEDANSDEQDDGDDGQGSSTN 195

Query: 465 ETDDDKLAEEISKQIMIWI*KM 530
             +DD   E   +QI  W+ K+
Sbjct: 196 NDEDDDDEETGDRQIYPWMRKV 217


>EF592536-1|ABQ95982.1|  598|Tribolium castaneum
           beta-N-acetylglucosaminidase NAG1 protein.
          Length = 598

 Score = 21.4 bits (43), Expect = 7.2
 Identities = 7/11 (63%), Positives = 8/11 (72%)
 Frame = +3

Query: 189 DLPAREGEGWR 221
           D PA  GEGW+
Sbjct: 298 DAPAHVGEGWQ 308


>EF125547-1|ABL73931.1|  255|Tribolium castaneum obstractor D
           protein.
          Length = 255

 Score = 21.4 bits (43), Expect = 7.2
 Identities = 8/9 (88%), Positives = 8/9 (88%)
 Frame = -3

Query: 239 SLRCSVPPT 213
           SLRC VPPT
Sbjct: 196 SLRCVVPPT 204


>AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.
          Length = 412

 Score = 21.4 bits (43), Expect = 7.2
 Identities = 19/82 (23%), Positives = 35/82 (42%), Gaps = 1/82 (1%)
 Frame = +3

Query: 288 NLHPNYENANQETGEKDSNANNNKETSEPLQQPIGETVNVETGESFEVKHQQNCQ-TTTN 464
           N+ PN +  +        + ++    S    Q +G  + +E   S E     + Q ++TN
Sbjct: 138 NVTPNCDVKSSVCSPGSGHQDSRTSPSGQHLQELG--LRLEDANSDEQDDGDDGQGSSTN 195

Query: 465 ETDDDKLAEEISKQIMIWI*KM 530
             +DD   E   +QI  W+ K+
Sbjct: 196 NDEDDDDEETGDRQIYPWMRKV 217


>AJ621748-1|CAF21851.1|  228|Tribolium castaneum zinc finger
           transcription factor protein.
          Length = 228

 Score = 21.0 bits (42), Expect = 9.5
 Identities = 6/8 (75%), Positives = 8/8 (100%)
 Frame = +2

Query: 239 MNRLCKIC 262
           MN+LCK+C
Sbjct: 1   MNQLCKVC 8


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 140,768
Number of Sequences: 336
Number of extensions: 2657
Number of successful extensions: 16
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18010165
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)