Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV10839
(688 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1486.09 |||ribosome biogenesis protein Nob1 |Schizosaccharom... 68 1e-12
SPCC330.11 |btb1||BTB/POZ domain protein Btb1|Schizosaccharomyce... 32 0.089
SPBC1773.01 |||striatin homolog|Schizosaccharomyces pombe|chr 2|... 28 1.5
SPBC1718.03 |ker1||DNA-directed RNA polymerase I complex subunit... 27 2.5
SPCC18B5.01c |bfr1|hba2, SPCPJ732.04c|brefeldin A efflux transpo... 27 2.5
SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7 domain|Schizosaccharo... 27 3.4
SPBC23G7.13c |||urea transporter |Schizosaccharomyces pombe|chr ... 26 4.4
SPAC23G3.06 |||U3 snoRNP protein Nop58 |Schizosaccharomyces pomb... 26 5.9
SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces pom... 26 5.9
SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein homolog|Schi... 26 5.9
SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharom... 26 5.9
SPAC26F1.10c |pyp1||tyrosine phosphatase Pyp1|Schizosaccharomyce... 25 7.8
SPAC29A4.19c |||P-type ATPase |Schizosaccharomyces pombe|chr 1||... 25 7.8
>SPAC1486.09 |||ribosome biogenesis protein Nob1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 388
Score = 67.7 bits (158), Expect = 1e-12
Identities = 36/86 (41%), Positives = 54/86 (62%)
Frame = +1
Query: 4 YTIQEVIDEITNDRQRKKLVVLPYDLKVKDVFADNIKFITEFSKKTGDYSSLSATDIKVM 183
YTI VI EI ++ RK + + + + IK ++EF+K+TGDYSSLS TDI+++
Sbjct: 30 YTIPRVIAEIRDETSRKNFELWGDQVIQRVPKPEFIKKVSEFAKQTGDYSSLSVTDIQIL 89
Query: 184 ALTYQLEKEKVGGTEHLKDEPTMQNL 261
ALTY+LE E GG L+ P +++
Sbjct: 90 ALTYELEVEFNGGDWRLRKYPGQKHI 115
>SPCC330.11 |btb1||BTB/POZ domain protein Btb1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1347
Score = 31.9 bits (69), Expect = 0.089
Identities = 17/57 (29%), Positives = 30/57 (52%)
Frame = -2
Query: 225 RTANLLLL*LVGQCHNLNICSREARIITCFLREFSNEFYVICEDILDF*VVWKDNEL 55
+ ANLL L + + ++ + +T + + N FYV+CE+ +D + KD EL
Sbjct: 713 KLANLLELPHLAEVLPFSVSRQPLLSLTNDILQLYNNFYVLCEETMDTVIKLKDGEL 769
>SPBC1773.01 |||striatin homolog|Schizosaccharomyces pombe|chr
2|||Manual
Length = 612
Score = 27.9 bits (59), Expect = 1.5
Identities = 23/82 (28%), Positives = 39/82 (47%), Gaps = 8/82 (9%)
Frame = +3
Query: 288 NLHPNYE-NANQET--GEK-DSNANNNKETSEPLQQPIGETVNVETGESFEVKHQQNCQ- 452
N+ PN N QE G K +NN ++ ++ + +P NV FEV++ +N
Sbjct: 139 NMQPNVSWNVLQEPTRGIKVPKESNNTQQNNQFVMEPSQNKGNVNDANFFEVEYARNENM 198
Query: 453 ---TTTNETDDDKLAEEISKQI 509
+++ DD L +EI K +
Sbjct: 199 NKLSSSELISDDLLEDEIMKPL 220
>SPBC1718.03 |ker1||DNA-directed RNA polymerase I complex subunit
subunit Ker1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 147
Score = 27.1 bits (57), Expect = 2.5
Identities = 13/46 (28%), Positives = 23/46 (50%)
Frame = +3
Query: 372 PLQQPIGETVNVETGESFEVKHQQNCQTTTNETDDDKLAEEISKQI 509
P+Q P E + + E E K +++ + E DD L +E K++
Sbjct: 70 PVQGPPTEELIIPPEEMLETKEEESLKHAREENDDLHLDKETKKRL 115
>SPCC18B5.01c |bfr1|hba2, SPCPJ732.04c|brefeldin A efflux
transporter Bfr1|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1530
Score = 27.1 bits (57), Expect = 2.5
Identities = 13/56 (23%), Positives = 28/56 (50%)
Frame = +3
Query: 309 NANQETGEKDSNANNNKETSEPLQQPIGETVNVETGESFEVKHQQNCQTTTNETDD 476
++N+ + E SN++++ + + G+ E GE+F +KH + + DD
Sbjct: 74 SSNEPSPESSSNSDSSSSDDSSVDRLAGDPF--ELGENFNLKHYLRAYKDSLQRDD 127
>SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7 domain|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1811
Score = 26.6 bits (56), Expect = 3.4
Identities = 19/63 (30%), Positives = 29/63 (46%), Gaps = 1/63 (1%)
Frame = +1
Query: 97 FADNIKFITEFSKKTGDYS-SLSATDIKVMALTYQLEKEKVGGTEHLKDEPTMQNLLKLQ 273
+ D I IT+F+K G+ LS D + LE E + +H+K E L+ +
Sbjct: 1346 YIDLISCITKFAKLNGNQKFCLSCVD-----MLKNLEHELIKHLKHMKKESVYSKKLEEE 1400
Query: 274 DWL 282
WL
Sbjct: 1401 YWL 1403
>SPBC23G7.13c |||urea transporter |Schizosaccharomyces pombe|chr
2|||Manual
Length = 664
Score = 26.2 bits (55), Expect = 4.4
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = -3
Query: 371 FTGLFVIVCIRVFLTCFLIGIF 306
FTG V+ I +F T F +GIF
Sbjct: 584 FTGWVVVGLIWIFFTVFAVGIF 605
>SPAC23G3.06 |||U3 snoRNP protein Nop58 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 508
Score = 25.8 bits (54), Expect = 5.9
Identities = 16/63 (25%), Positives = 32/63 (50%)
Frame = +3
Query: 315 NQETGEKDSNANNNKETSEPLQQPIGETVNVETGESFEVKHQQNCQTTTNETDDDKLAEE 494
+QE E D K+ S L++ GE+ E E + KH+++ + + E++D + ++
Sbjct: 441 SQEDVEMDIVIEKKKKKSSKLKEADGESSKKEKKEKKDKKHKKS-KRKSEESEDGESPKK 499
Query: 495 ISK 503
K
Sbjct: 500 KKK 502
>SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces
pombe|chr 1||Partial|Manual
Length = 1887
Score = 25.8 bits (54), Expect = 5.9
Identities = 14/52 (26%), Positives = 21/52 (40%)
Frame = +3
Query: 333 KDSNANNNKETSEPLQQPIGETVNVETGESFEVKHQQNCQTTTNETDDDKLA 488
K+ +N++ S E N ++ + N TN DDDKLA
Sbjct: 506 KEGGSNSSSNISNVANFDSAEDDNDNDNDNDRDSNNNNNNNNTNTDDDDKLA 557
>SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein
homolog|Schizosaccharomyces pombe|chr 2|||Manual
Length = 3071
Score = 25.8 bits (54), Expect = 5.9
Identities = 18/82 (21%), Positives = 41/82 (50%), Gaps = 1/82 (1%)
Frame = +1
Query: 31 ITNDRQRKKLVVL-PYDLKVKDVFADNIKFITEFSKKTGDYSSLSATDIKVMALTYQLEK 207
I ++ R LV+ PY+ + ++ + +F+T K + LS++D + + ++ +
Sbjct: 2264 IVRNKTRWSLVIAEPYNDFIAEIAPEGEEFLTYLRKHSHPMLKLSSSDCYLWSSSFYI-- 2321
Query: 208 EKVGGTEHLKDEPTMQNLLKLQ 273
E++G T + LL+L+
Sbjct: 2322 EEIGSTHVRLMTSEGEKLLRLE 2343
>SPBCPT2R1.08c |tlh2||RecQ type DNA helicase
Tlh1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1919
Score = 25.8 bits (54), Expect = 5.9
Identities = 14/52 (26%), Positives = 21/52 (40%)
Frame = +3
Query: 333 KDSNANNNKETSEPLQQPIGETVNVETGESFEVKHQQNCQTTTNETDDDKLA 488
K+ +N++ S E N ++ + N TN DDDKLA
Sbjct: 506 KEGGSNSSSNISNVANFDSAEDDNDNDNDNDRDSNNNNNNNNTNTDDDDKLA 557
>SPAC26F1.10c |pyp1||tyrosine phosphatase Pyp1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 550
Score = 25.4 bits (53), Expect = 7.8
Identities = 10/17 (58%), Positives = 12/17 (70%)
Frame = -1
Query: 427 SNDSPVSTFTVSPIGCC 377
SN S STFT++P G C
Sbjct: 4 SNGSKSSTFTIAPSGSC 20
>SPAC29A4.19c |||P-type ATPase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1096
Score = 25.4 bits (53), Expect = 7.8
Identities = 19/69 (27%), Positives = 31/69 (44%), Gaps = 1/69 (1%)
Frame = -3
Query: 320 LIGIFIIGMKVKPSQSCNFN-RFCIVGSSLRCSVPPTFSFSSW*VSAITLISVAERLE*S 144
L+G ++G ++ + FN FC + PP FS S+ + S+ + LE
Sbjct: 536 LVGNELVGDPLEVTLFTQFNGTFCATIRASNTPHPPLFSVSNSFDGPSQIFSIYKALEFD 595
Query: 143 PVFFENSVM 117
PV SV+
Sbjct: 596 PVLRRMSVI 604
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,498,192
Number of Sequences: 5004
Number of extensions: 47079
Number of successful extensions: 177
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 169
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 177
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 317927284
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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