Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV10839
(688 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_01_0107 + 785993-786359,786773-787703,787807-787975,788472-78... 65 4e-11
04_04_1462 - 33769122-33769151,33769385-33769426,33769571-337701... 31 0.86
07_03_1214 + 24931142-24932314,24934177-24934434 30 1.5
07_03_0122 + 13675099-13675803 30 2.0
02_05_0701 + 31022485-31022648,31023569-31023611,31023712-310237... 29 2.6
11_06_0153 - 20693663-20693689,20693808-20694096,20694493-206948... 28 6.0
05_04_0132 + 18303925-18307164 28 6.0
04_04_1144 + 31222556-31222633,31223238-31227665,31227724-312277... 28 6.0
>02_01_0107 +
785993-786359,786773-787703,787807-787975,788472-788588,
788815-788961
Length = 576
Score = 65.3 bits (152), Expect = 4e-11
Identities = 29/80 (36%), Positives = 53/80 (66%)
Frame = +1
Query: 7 TIQEVIDEITNDRQRKKLVVLPYDLKVKDVFADNIKFITEFSKKTGDYSSLSATDIKVMA 186
T+ EV++E+ + R++L +L ++ D + +K + +F+++TGD +LS DIK++A
Sbjct: 86 TVPEVLEEVRDASARRRLALLMAPVETLDPAPEFVKKVVKFARETGDLQTLSDVDIKIIA 145
Query: 187 LTYQLEKEKVGGTEHLKDEP 246
L Y LE E + GT HL+++P
Sbjct: 146 LAYMLEAE-IHGTNHLREQP 164
>04_04_1462 -
33769122-33769151,33769385-33769426,33769571-33770158,
33770398-33770508,33770585-33770625,33771238-33771382,
33771578-33771781,33772626-33772769,33772991-33773183,
33774559-33774602,33774694-33774822,33774907-33774954,
33775058-33775120,33775198-33775236,33776694-33776767,
33777460-33777518,33777709-33777768,33777920-33778044,
33778693-33778751,33779418-33779511,33779572-33779625,
33779775-33779813,33780423-33780602
Length = 854
Score = 31.1 bits (67), Expect = 0.86
Identities = 20/71 (28%), Positives = 34/71 (47%)
Frame = +1
Query: 10 IQEVIDEITNDRQRKKLVVLPYDLKVKDVFADNIKFITEFSKKTGDYSSLSATDIKVMAL 189
++E E+ ++ +K + D KVK+ F +NIKF + KT D +S K +
Sbjct: 289 VRERKRELKQAKEARKKAIDDMDPKVKEAF-ENIKFYKFYPVKTPDTPDVSNVKAKYINR 347
Query: 190 TYQLEKEKVGG 222
Y+ +GG
Sbjct: 348 YYRHAHHLMGG 358
>07_03_1214 + 24931142-24932314,24934177-24934434
Length = 476
Score = 30.3 bits (65), Expect = 1.5
Identities = 16/59 (27%), Positives = 26/59 (44%)
Frame = +3
Query: 303 YENANQETGEKDSNANNNKETSEPLQQPIGETVNVETGESFEVKHQQNCQTTTNETDDD 479
YE N + E + ++ E +E L QPI + + G F+ + +E DDD
Sbjct: 377 YEEGNDDDEE---DVDDEDEDTEYLVQPIAQPQAMAVGNDFDAAEADDADEDRDEVDDD 432
>07_03_0122 + 13675099-13675803
Length = 234
Score = 29.9 bits (64), Expect = 2.0
Identities = 13/35 (37%), Positives = 21/35 (60%)
Frame = +3
Query: 180 YGTDLPAREGEGWRYGTSQR*TDYAKSVKVTGLAG 284
+G ++P + EG RYG + +DYA ++ G AG
Sbjct: 113 HGMEVPVFDAEGRRYGLTCGYSDYAMCYRLFGAAG 147
>02_05_0701 +
31022485-31022648,31023569-31023611,31023712-31023777,
31024007-31024062,31024091-31024190,31024290-31024472,
31024953-31025001,31025089-31025169,31025209-31025268,
31025394-31025514,31025612-31025693,31025783-31025868,
31026011-31026111,31026246-31026387,31026488-31026638,
31026710-31026937
Length = 570
Score = 29.5 bits (63), Expect = 2.6
Identities = 13/31 (41%), Positives = 17/31 (54%)
Frame = +1
Query: 223 TEHLKDEPTMQNLLKLQDWLGLTFIPIMKMP 315
+ HLKD P LL L + LG F+P + P
Sbjct: 163 SSHLKDGPYQDQLLHLAENLGSRFLPAFETP 193
>11_06_0153 -
20693663-20693689,20693808-20694096,20694493-20694829,
20695304-20696516,20700247-20700744
Length = 787
Score = 28.3 bits (60), Expect = 6.0
Identities = 21/90 (23%), Positives = 38/90 (42%), Gaps = 9/90 (10%)
Frame = +3
Query: 255 KSVKVTGLAGFNLHPNYENANQETGEKDSNANN----NKETSEPLQQPIGETVNVETGES 422
+ + VT + ++ N + + DS+++N N + + P Q G+ V +E
Sbjct: 305 RKLYVTSDSSHGMNSNIKRQRKYICPSDSDSSNEQICNDDVAVPDNQSTGQNVPIEVDSE 364
Query: 423 FE--VKH---QQNCQTTTNETDDDKLAEEI 497
E +H QQ CQ N+T K +
Sbjct: 365 EEGNARHGGNQQTCQKNVNDTAAQKYLNSV 394
>05_04_0132 + 18303925-18307164
Length = 1079
Score = 28.3 bits (60), Expect = 6.0
Identities = 20/67 (29%), Positives = 29/67 (43%), Gaps = 2/67 (2%)
Frame = +3
Query: 318 QETGEKDSNANNN--KETSEPLQQPIGETVNVETGESFEVKHQQNCQTTTNETDDDKLAE 491
QE E N + KE + Q G+ N+E+ EV N + N DD
Sbjct: 454 QELAETADNIPDECCKEETSMEQDEGGDGTNMESESISEVAEHPNVEDEENTQDDGGSEM 513
Query: 492 EISKQIM 512
EIS++I+
Sbjct: 514 EISEEII 520
>04_04_1144 +
31222556-31222633,31223238-31227665,31227724-31227789,
31227790-31228014,31228097-31228255,31228393-31228551,
31228855-31229013,31229371-31229490,31229604-31229825
Length = 1871
Score = 28.3 bits (60), Expect = 6.0
Identities = 19/87 (21%), Positives = 39/87 (44%), Gaps = 2/87 (2%)
Frame = +3
Query: 291 LHPNYENANQETGEKDSNANNNKETSEPLQQPIGETVNVETGESFEVK--HQQNCQTTTN 464
LH E + E ++ ++ L+Q +GE+ N S E+K ++ Q +
Sbjct: 459 LHATEEALKLQLEEAEARVEVAEKKGSDLEQLLGESENKLVASSGELKLLEERVQQEAAS 518
Query: 465 ETDDDKLAEEISKQIMIWI*KMTKLMS 545
+ +KL EE + + + K+ +L +
Sbjct: 519 SAEKEKLLEEATNSVEAYKEKINELQA 545
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,808,260
Number of Sequences: 37544
Number of extensions: 256928
Number of successful extensions: 791
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 757
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 788
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1744894544
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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