Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV10839
(688 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC064630-1|AAH64630.1| 412|Homo sapiens NIN1/RPN12 binding prot... 102 1e-21
AY487344-1|AAR85357.1| 412|Homo sapiens RNA-binding protein NOB... 102 1e-21
AB026125-1|BAA86961.1| 412|Homo sapiens ART-4 protein. 102 1e-21
BC000050-1|AAH00050.2| 293|Homo sapiens NOB1 protein protein. 33 1.3
AK001028-1|BAA91473.1| 255|Homo sapiens protein ( Homo sapiens ... 33 1.3
BC130418-1|AAI30419.1| 1153|Homo sapiens ARID4B protein protein. 31 2.9
BC017800-1|AAH17800.1| 397|Homo sapiens Unknown (protein for IM... 31 2.9
AY220790-1|AAO63590.1| 1312|Homo sapiens SIN3A-associated protei... 31 2.9
AL391994-2|CAI13747.1| 1310|Homo sapiens AT rich interactive dom... 31 2.9
AL391994-1|CAI13746.1| 927|Homo sapiens AT rich interactive dom... 31 2.9
AL133418-5|CAI22961.1| 1310|Homo sapiens AT rich interactive dom... 31 2.9
AL133418-1|CAI22958.1| 927|Homo sapiens AT rich interactive dom... 31 2.9
AF227899-1|AAF36964.1| 873|Homo sapiens breast carcinoma-associ... 31 2.9
AB210032-1|BAE06114.1| 1325|Homo sapiens ARID4B variant protein ... 31 2.9
AB030181-1|BAA89794.1| 803|Homo sapiens RBP1-like protein protein. 31 2.9
AL445584-1|CAH73043.1| 1343|Homo sapiens family with sequence si... 31 5.1
>BC064630-1|AAH64630.1| 412|Homo sapiens NIN1/RPN12 binding protein
1 homolog (S. cerevisiae) protein.
Length = 412
Score = 102 bits (245), Expect = 1e-21
Identities = 48/82 (58%), Positives = 63/82 (76%)
Frame = +1
Query: 1 VYTIQEVIDEITNDRQRKKLVVLPYDLKVKDVFADNIKFITEFSKKTGDYSSLSATDIKV 180
+YTI+EV+ EI + R++L VLPY+L+ K+ + ++ +TEFSKKTGDY SLSATDI+V
Sbjct: 27 IYTIREVVTEIRDKATRRRLAVLPYELRFKEPLPEYVRLVTEFSKKTGDYPSLSATDIQV 86
Query: 181 MALTYQLEKEKVGGTEHLKDEP 246
+ALTYQLE E V G HLK EP
Sbjct: 87 LALTYQLEAEFV-GVSHLKQEP 107
Score = 32.7 bits (71), Expect = 1.3
Identities = 11/24 (45%), Positives = 18/24 (75%)
Frame = +1
Query: 610 DETDSDGGDWITTKNLAEKRKEME 681
D++D DGG WIT N+ + ++E+E
Sbjct: 199 DDSDDDGGGWITPSNIKQIQQELE 222
>AY487344-1|AAR85357.1| 412|Homo sapiens RNA-binding protein NOB1
protein.
Length = 412
Score = 102 bits (245), Expect = 1e-21
Identities = 48/82 (58%), Positives = 63/82 (76%)
Frame = +1
Query: 1 VYTIQEVIDEITNDRQRKKLVVLPYDLKVKDVFADNIKFITEFSKKTGDYSSLSATDIKV 180
+YTI+EV+ EI + R++L VLPY+L+ K+ + ++ +TEFSKKTGDY SLSATDI+V
Sbjct: 27 IYTIREVVTEIRDKATRRRLAVLPYELRFKEPLPEYVRLVTEFSKKTGDYPSLSATDIQV 86
Query: 181 MALTYQLEKEKVGGTEHLKDEP 246
+ALTYQLE E V G HLK EP
Sbjct: 87 LALTYQLEAEFV-GVSHLKQEP 107
Score = 32.7 bits (71), Expect = 1.3
Identities = 11/24 (45%), Positives = 18/24 (75%)
Frame = +1
Query: 610 DETDSDGGDWITTKNLAEKRKEME 681
D++D DGG WIT N+ + ++E+E
Sbjct: 199 DDSDDDGGGWITPSNIKQIQQELE 222
>AB026125-1|BAA86961.1| 412|Homo sapiens ART-4 protein.
Length = 412
Score = 102 bits (245), Expect = 1e-21
Identities = 48/82 (58%), Positives = 63/82 (76%)
Frame = +1
Query: 1 VYTIQEVIDEITNDRQRKKLVVLPYDLKVKDVFADNIKFITEFSKKTGDYSSLSATDIKV 180
+YTI+EV+ EI + R++L VLPY+L+ K+ + ++ +TEFSKKTGDY SLSATDI+V
Sbjct: 27 IYTIREVVTEIRDKATRRRLAVLPYELRFKEPLPEYVRLVTEFSKKTGDYPSLSATDIQV 86
Query: 181 MALTYQLEKEKVGGTEHLKDEP 246
+ALTYQLE E V G HLK EP
Sbjct: 87 LALTYQLEAEFV-GVSHLKQEP 107
Score = 32.7 bits (71), Expect = 1.3
Identities = 11/24 (45%), Positives = 18/24 (75%)
Frame = +1
Query: 610 DETDSDGGDWITTKNLAEKRKEME 681
D++D DGG WIT N+ + ++E+E
Sbjct: 199 DDSDDDGGGWITPSNIKQIQQELE 222
>BC000050-1|AAH00050.2| 293|Homo sapiens NOB1 protein protein.
Length = 293
Score = 32.7 bits (71), Expect = 1.3
Identities = 11/24 (45%), Positives = 18/24 (75%)
Frame = +1
Query: 610 DETDSDGGDWITTKNLAEKRKEME 681
D++D DGG WIT N+ + ++E+E
Sbjct: 80 DDSDDDGGGWITPSNIKQIQQELE 103
>AK001028-1|BAA91473.1| 255|Homo sapiens protein ( Homo sapiens
cDNA FLJ10166 fis, clone HEMBA1003615. ).
Length = 255
Score = 32.7 bits (71), Expect = 1.3
Identities = 11/24 (45%), Positives = 18/24 (75%)
Frame = +1
Query: 610 DETDSDGGDWITTKNLAEKRKEME 681
D++D DGG WIT N+ + ++E+E
Sbjct: 42 DDSDDDGGGWITPSNIKQIQQELE 65
>BC130418-1|AAI30419.1| 1153|Homo sapiens ARID4B protein protein.
Length = 1153
Score = 31.5 bits (68), Expect = 2.9
Identities = 17/66 (25%), Positives = 32/66 (48%)
Frame = +3
Query: 297 PNYENANQETGEKDSNANNNKETSEPLQQPIGETVNVETGESFEVKHQQNCQTTTNETDD 476
P + + +E K N N + + + E++N++ E+ E K + +T E +D
Sbjct: 480 PTHSDQEKEVNIKKPEDNENLDDKDDDTTRVDESLNIKV-EAEEEKAKSGDETNKEEDED 538
Query: 477 DKLAEE 494
D+ AEE
Sbjct: 539 DEEAEE 544
>BC017800-1|AAH17800.1| 397|Homo sapiens Unknown (protein for
IMAGE:4663973) protein.
Length = 397
Score = 31.5 bits (68), Expect = 2.9
Identities = 17/66 (25%), Positives = 32/66 (48%)
Frame = +3
Query: 297 PNYENANQETGEKDSNANNNKETSEPLQQPIGETVNVETGESFEVKHQQNCQTTTNETDD 476
P + + +E K N N + + + E++N++ E+ E K + +T E +D
Sbjct: 222 PTHSDQEKEVNIKKPEDNENLDDKDDDTTRVDESLNIKV-EAEEEKAKSGDETNKEEDED 280
Query: 477 DKLAEE 494
D+ AEE
Sbjct: 281 DEEAEE 286
>AY220790-1|AAO63590.1| 1312|Homo sapiens SIN3A-associated protein
180 protein.
Length = 1312
Score = 31.5 bits (68), Expect = 2.9
Identities = 17/66 (25%), Positives = 32/66 (48%)
Frame = +3
Query: 297 PNYENANQETGEKDSNANNNKETSEPLQQPIGETVNVETGESFEVKHQQNCQTTTNETDD 476
P + + +E K N N + + + E++N++ E+ E K + +T E +D
Sbjct: 480 PTHSDQEKEVNIKKPEDNENLDDKDDDTTRVDESLNIKV-EAEEEKAKSGDETNKEEDED 538
Query: 477 DKLAEE 494
D+ AEE
Sbjct: 539 DEEAEE 544
>AL391994-2|CAI13747.1| 1310|Homo sapiens AT rich interactive domain
4B (RBP1-like) protein.
Length = 1310
Score = 31.5 bits (68), Expect = 2.9
Identities = 17/66 (25%), Positives = 32/66 (48%)
Frame = +3
Query: 297 PNYENANQETGEKDSNANNNKETSEPLQQPIGETVNVETGESFEVKHQQNCQTTTNETDD 476
P + + +E K N N + + + E++N++ E+ E K + +T E +D
Sbjct: 478 PTHSDQEKEVNIKKPEDNENLDDKDDDTTRVDESLNIKV-EAEEEKAKSGDETNKEEDED 536
Query: 477 DKLAEE 494
D+ AEE
Sbjct: 537 DEEAEE 542
>AL391994-1|CAI13746.1| 927|Homo sapiens AT rich interactive domain
4B (RBP1-like) protein.
Length = 927
Score = 31.5 bits (68), Expect = 2.9
Identities = 17/66 (25%), Positives = 32/66 (48%)
Frame = +3
Query: 297 PNYENANQETGEKDSNANNNKETSEPLQQPIGETVNVETGESFEVKHQQNCQTTTNETDD 476
P + + +E K N N + + + E++N++ E+ E K + +T E +D
Sbjct: 285 PTHSDQEKEVNIKKPEDNENLDDKDDDTTRVDESLNIKV-EAEEEKAKSGDETNKEEDED 343
Query: 477 DKLAEE 494
D+ AEE
Sbjct: 344 DEEAEE 349
>AL133418-5|CAI22961.1| 1310|Homo sapiens AT rich interactive domain
4B (RBP1-like) protein.
Length = 1310
Score = 31.5 bits (68), Expect = 2.9
Identities = 17/66 (25%), Positives = 32/66 (48%)
Frame = +3
Query: 297 PNYENANQETGEKDSNANNNKETSEPLQQPIGETVNVETGESFEVKHQQNCQTTTNETDD 476
P + + +E K N N + + + E++N++ E+ E K + +T E +D
Sbjct: 478 PTHSDQEKEVNIKKPEDNENLDDKDDDTTRVDESLNIKV-EAEEEKAKSGDETNKEEDED 536
Query: 477 DKLAEE 494
D+ AEE
Sbjct: 537 DEEAEE 542
>AL133418-1|CAI22958.1| 927|Homo sapiens AT rich interactive domain
4B (RBP1-like) protein.
Length = 927
Score = 31.5 bits (68), Expect = 2.9
Identities = 17/66 (25%), Positives = 32/66 (48%)
Frame = +3
Query: 297 PNYENANQETGEKDSNANNNKETSEPLQQPIGETVNVETGESFEVKHQQNCQTTTNETDD 476
P + + +E K N N + + + E++N++ E+ E K + +T E +D
Sbjct: 285 PTHSDQEKEVNIKKPEDNENLDDKDDDTTRVDESLNIKV-EAEEEKAKSGDETNKEEDED 343
Query: 477 DKLAEE 494
D+ AEE
Sbjct: 344 DEEAEE 349
>AF227899-1|AAF36964.1| 873|Homo sapiens breast
carcinoma-associated antigen isoform I protein.
Length = 873
Score = 31.5 bits (68), Expect = 2.9
Identities = 17/66 (25%), Positives = 32/66 (48%)
Frame = +3
Query: 297 PNYENANQETGEKDSNANNNKETSEPLQQPIGETVNVETGESFEVKHQQNCQTTTNETDD 476
P + + +E K N N + + + E++N++ E+ E K + +T E +D
Sbjct: 41 PTHSDQEKEVNIKKPEDNENLDDKDDDTTRVDESLNIKV-EAEEEKAKSGDETNKEEDED 99
Query: 477 DKLAEE 494
D+ AEE
Sbjct: 100 DEEAEE 105
>AB210032-1|BAE06114.1| 1325|Homo sapiens ARID4B variant protein
protein.
Length = 1325
Score = 31.5 bits (68), Expect = 2.9
Identities = 17/66 (25%), Positives = 32/66 (48%)
Frame = +3
Query: 297 PNYENANQETGEKDSNANNNKETSEPLQQPIGETVNVETGESFEVKHQQNCQTTTNETDD 476
P + + +E K N N + + + E++N++ E+ E K + +T E +D
Sbjct: 493 PTHSDQEKEVNIKKPEDNENLDDKDDDTTRVDESLNIKV-EAEEEKAKSGDETNKEEDED 551
Query: 477 DKLAEE 494
D+ AEE
Sbjct: 552 DEEAEE 557
>AB030181-1|BAA89794.1| 803|Homo sapiens RBP1-like protein protein.
Length = 803
Score = 31.5 bits (68), Expect = 2.9
Identities = 17/66 (25%), Positives = 32/66 (48%)
Frame = +3
Query: 297 PNYENANQETGEKDSNANNNKETSEPLQQPIGETVNVETGESFEVKHQQNCQTTTNETDD 476
P + + +E K N N + + + E++N++ E+ E K + +T E +D
Sbjct: 161 PTHSDQEKEVNIKKPEDNENLDDKDDDTTRVDESLNIKV-EAEEEKPKSGDETNKEEDED 219
Query: 477 DKLAEE 494
D+ AEE
Sbjct: 220 DEEAEE 225
>AL445584-1|CAH73043.1| 1343|Homo sapiens family with sequence
similarity 75, member A6 protein.
Length = 1343
Score = 30.7 bits (66), Expect = 5.1
Identities = 18/53 (33%), Positives = 27/53 (50%)
Frame = +3
Query: 267 VTGLAGFNLHPNYENANQETGEKDSNANNNKETSEPLQQPIGETVNVETGESF 425
++GL G N H + + QET + S A N+ +PL + ET +E G F
Sbjct: 267 ISGLGGSNSHVSASSRWQETA-RTSCAFNSSVQQDPLSRHPPETCQMEAGSLF 318
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 81,897,595
Number of Sequences: 237096
Number of extensions: 1501514
Number of successful extensions: 7625
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 7556
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7625
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 7839245960
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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