Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10839
         (688 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    23   2.7  
DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chlor...    22   4.8  
AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex det...    22   4.8  
AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    22   6.3  
AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly pro...    21   8.3  

>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 23.0 bits (47), Expect = 2.7
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = +3

Query: 330 EKDSNANNNKETSEPLQQPIGETVNVETG 416
           E   +  NNKE SE  +Q + + ++ +TG
Sbjct: 475 ENLGDGRNNKEDSEEFRQRLRKELDSKTG 503


>DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 383

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 10/31 (32%), Positives = 15/31 (48%)
 Frame = -1

Query: 424 NDSPVSTFTVSPIGCCKGSLVSLLLFALESF 332
           N SPV   TV    CC+G   ++ +  +  F
Sbjct: 335 NRSPVRPATVQYDTCCQGRATAIYIDKVSRF 365


>AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex
           determiner protein.
          Length = 428

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 9/23 (39%), Positives = 11/23 (47%)
 Frame = +3

Query: 288 NLHPNYENANQETGEKDSNANNN 356
           N   NY N N      ++N NNN
Sbjct: 328 NYKYNYNNNNYNNNNYNNNYNNN 350


>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 11/32 (34%), Positives = 16/32 (50%)
 Frame = +1

Query: 244 PTMQNLLKLQDWLGLTFIPIMKMPIRKQVRKT 339
           P M N   L   LGL    +++M ++ QV  T
Sbjct: 51  PVMNNTETLTVQLGLKLSQLIEMNLKNQVMTT 82


>AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly
           protein 8 protein.
          Length = 416

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 10/21 (47%), Positives = 11/21 (52%)
 Frame = +1

Query: 247 TMQNLLKLQDWLGLTFIPIMK 309
           TM  LL    W   TF+ IMK
Sbjct: 60  TMNYLLDTDQWGDKTFVIIMK 80


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 164,393
Number of Sequences: 438
Number of extensions: 3087
Number of successful extensions: 7
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20952180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)