Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10829
         (744 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U80443-2|AAB37673.1|  129|Caenorhabditis elegans Hypothetical pr...    28   8.0  
AC006673-5|AAF39919.2|  335|Caenorhabditis elegans Serpentine re...    28   8.0  

>U80443-2|AAB37673.1|  129|Caenorhabditis elegans Hypothetical
           protein C24A11.5 protein.
          Length = 129

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 10/32 (31%), Positives = 20/32 (62%)
 Frame = +1

Query: 433 VNHLYRSFKLLSYIIKDNIRFSLSLFNSHIYV 528
           ++H++  F L S +IK+ ++  L  F+SH  +
Sbjct: 81  ISHIFAQFLLESAVIKELVKLWLFFFDSHFLI 112


>AC006673-5|AAF39919.2|  335|Caenorhabditis elegans Serpentine
           receptor, class h protein8 protein.
          Length = 335

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 11/34 (32%), Positives = 18/34 (52%)
 Frame = +1

Query: 340 STERRCRMHATFIIFFIDIYVCTFT*SENANVNH 441
           S  RRC M+  ++ F   ++VC FT     ++ H
Sbjct: 127 SIARRCVMYLRYMFFICVVFVCIFTILSYPDLKH 160


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,054,413
Number of Sequences: 27780
Number of extensions: 250335
Number of successful extensions: 384
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 378
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 384
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1756472266
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)