Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV10826X
(338 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC25D12.04 |suc22||ribonucleotide reductase small subunit Suc2... 106 8e-25
SPCC4E9.01c |rec11|SPCC550.16c|meiotic cohesin complex subunit R... 26 1.4
SPCC1494.07 |||conserved eukaryotic protein|Schizosaccharomyces ... 26 1.8
SPBC2F12.15c |||palmitoyltransferase|Schizosaccharomyces pombe|c... 26 1.8
SPAC22G7.02 |kap111||karyopherin Kap111|Schizosaccharomyces pomb... 25 2.4
SPCC4B3.12 |set9||histone lysine methyltransferase Set9|Schizosa... 25 3.2
SPCC1795.08c |||histone acetyltransferase complex subunit |Schiz... 25 3.2
SPAC22H10.09 |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 25 4.2
SPBC16D10.08c |||heat shock protein Hsp104 |Schizosaccharomyces ... 24 5.5
SPBC405.01 |ade1|min4, SPBC4C3.02c|phosphoribosylamine-glycine l... 24 7.3
SPBC428.01c |nup107|SPBC582.11c|nucleoporin Nup107|Schizosacchar... 24 7.3
SPBC776.14 |plh1||phospholipid-diacylglycerol acyltransferase Pl... 24 7.3
SPBC1347.05c |||DNAJ domain protein Scj1|Schizosaccharomyces pom... 23 9.6
SPAC8C9.04 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||... 23 9.6
SPCC622.11 |||LMBR1-like membrane protein|Schizosaccharomyces po... 23 9.6
>SPBC25D12.04 |suc22||ribonucleotide reductase small subunit Suc22
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 391
Score = 106 bits (255), Expect = 8e-25
Identities = 50/84 (59%), Positives = 58/84 (69%)
Frame = +3
Query: 3 KADWALQWIASKTATFGERIVAFAAVEXXXXXXXXXXXXWLKKRGLMPGLTFSNGLISRD 182
KA WAL+WI + +T+ R+VAFAAVE WLKKRGLMPGLTFSN LI RD
Sbjct: 203 KAKWALRWINDEDSTYAIRLVAFAAVEGIFFSGSFASIFWLKKRGLMPGLTFSNELICRD 262
Query: 183 EGLHTDFACLMFQHLGQKATKECV 254
EGLHTDFACLMF HL + ++ V
Sbjct: 263 EGLHTDFACLMFSHLKHRPGRKVV 286
Score = 37.9 bits (84), Expect = 4e-04
Identities = 17/25 (68%), Positives = 21/25 (84%)
Frame = +2
Query: 260 IVKDAVVIEQEFLTDALPVRLLGMN 334
I+ +AV IE+E+ TDALPV LLGMN
Sbjct: 289 IIVEAVDIEKEYFTDALPVSLLGMN 313
>SPCC4E9.01c |rec11|SPCC550.16c|meiotic cohesin complex subunit
Rec11|Schizosaccharomyces pombe|chr 3|||Manual
Length = 923
Score = 26.2 bits (55), Expect = 1.4
Identities = 8/21 (38%), Positives = 15/21 (71%)
Frame = -2
Query: 220 WNIRQAKSVCRPSSLEISPLL 158
WNI+ ++ +C SLE+ P++
Sbjct: 752 WNIKLSEKLCEICSLEVGPIV 772
>SPCC1494.07 |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1502
Score = 25.8 bits (54), Expect = 1.8
Identities = 13/22 (59%), Positives = 15/22 (68%)
Frame = -2
Query: 184 SSLEISPLLNVSPGIRPRFLSQ 119
SS I LL VSPGI +FLS+
Sbjct: 263 SSFLIPSLLGVSPGITVKFLSR 284
>SPBC2F12.15c |||palmitoyltransferase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 329
Score = 25.8 bits (54), Expect = 1.8
Identities = 8/21 (38%), Positives = 12/21 (57%)
Frame = +1
Query: 253 SAYCERCSSH*ARVSHRCAPC 315
S +CE+C + SH C+ C
Sbjct: 96 SRFCEKCQEYKCDRSHHCSQC 116
>SPAC22G7.02 |kap111||karyopherin Kap111|Schizosaccharomyces pombe|chr
1|||Manual
Length = 990
Score = 25.4 bits (53), Expect = 2.4
Identities = 15/40 (37%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
Frame = -2
Query: 205 AKSVCRPSSLEIS--PLLNVSPGIRPRFLSQKMEAKLPEK 92
A C SLE P NVS I+ RFL+ ++A++ +K
Sbjct: 928 ATRACLTQSLEEEGFPSRNVSNEIKRRFLTDLLKARIKDK 967
>SPCC4B3.12 |set9||histone lysine methyltransferase
Set9|Schizosaccharomyces pombe|chr 3|||Manual
Length = 441
Score = 25.0 bits (52), Expect = 3.2
Identities = 9/23 (39%), Positives = 13/23 (56%)
Frame = +1
Query: 214 CSNT*GKRQLRNVSAYCERCSSH 282
CS T ++N SA+C +C H
Sbjct: 368 CSQTFINEDIQNSSAFCPKCIRH 390
>SPCC1795.08c |||histone acetyltransferase complex subunit
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 985
Score = 25.0 bits (52), Expect = 3.2
Identities = 12/30 (40%), Positives = 19/30 (63%)
Frame = -1
Query: 212 QTSKICMQTFIPGNKSITECKSRHKAPLFE 123
+ SK+ M+ +P KS T ++ +APLFE
Sbjct: 354 EPSKLQMENKLPSEKSPTIDRTGVEAPLFE 383
>SPAC22H10.09 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 646
Score = 24.6 bits (51), Expect = 4.2
Identities = 8/19 (42%), Positives = 13/19 (68%)
Frame = -2
Query: 292 LLLNDYCIFHNMQTHSLVA 236
LL+ DY +FH +H ++A
Sbjct: 248 LLIRDYSLFHGNSSHCMLA 266
>SPBC16D10.08c |||heat shock protein Hsp104 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 905
Score = 24.2 bits (50), Expect = 5.5
Identities = 10/47 (21%), Positives = 26/47 (55%)
Frame = -2
Query: 169 SPLLNVSPGIRPRFLSQKMEAKLPEKKIPSTAAKATILSPNVAVLLA 29
+P+L PG+ +++ + ++ + +P+ + +LS +V L+A
Sbjct: 204 NPVLIGEPGVGKTSIAEGLARRIIDDDVPANLSNCKLLSLDVGSLVA 250
>SPBC405.01 |ade1|min4, SPBC4C3.02c|phosphoribosylamine-glycine
ligase |Schizosaccharomyces pombe|chr 2|||Manual
Length = 788
Score = 23.8 bits (49), Expect = 7.3
Identities = 10/27 (37%), Positives = 16/27 (59%)
Frame = -2
Query: 232 CPKCWNIRQAKSVCRPSSLEISPLLNV 152
CP N+R S+ P+ + + PLL+V
Sbjct: 644 CPWDKNVRLGDSLLIPTRIYVKPLLHV 670
>SPBC428.01c |nup107|SPBC582.11c|nucleoporin
Nup107|Schizosaccharomyces pombe|chr 2|||Manual
Length = 794
Score = 23.8 bits (49), Expect = 7.3
Identities = 9/13 (69%), Positives = 12/13 (92%)
Frame = +1
Query: 133 GALCRDLHSVMDL 171
GALC DL+SV+D+
Sbjct: 314 GALCGDLNSVLDV 326
>SPBC776.14 |plh1||phospholipid-diacylglycerol acyltransferase
Plh1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 623
Score = 23.8 bits (49), Expect = 7.3
Identities = 10/29 (34%), Positives = 16/29 (55%)
Frame = -1
Query: 185 FIPGNKSITECKSRHKAPLFEPEDGSKTA 99
F P N SIT + +H+ F+ G ++A
Sbjct: 547 FNPANTSITNYEIKHEPAAFDLRGGPRSA 575
>SPBC1347.05c |||DNAJ domain protein Scj1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 381
Score = 23.4 bits (48), Expect = 9.6
Identities = 7/22 (31%), Positives = 11/22 (50%)
Frame = +1
Query: 262 CERCSSH*ARVSHRCAPCKTAR 327
C C+ + + H+C CK R
Sbjct: 199 CNACNGNGRTIKHKCPRCKGER 220
>SPAC8C9.04 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 647
Score = 23.4 bits (48), Expect = 9.6
Identities = 8/26 (30%), Positives = 16/26 (61%)
Frame = -3
Query: 327 PSSLTGSASVRNSCSMTTASFTICRH 250
PSS + SAS +++ + +A + + H
Sbjct: 159 PSSSSSSASTKSTATTQSADYVVAEH 184
>SPCC622.11 |||LMBR1-like membrane protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 562
Score = 23.4 bits (48), Expect = 9.6
Identities = 9/15 (60%), Positives = 13/15 (86%)
Frame = +1
Query: 1 RKQIGLYSGLQARLQ 45
R+ +G+YS LQARL+
Sbjct: 236 RQAVGVYSKLQARLE 250
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,419,075
Number of Sequences: 5004
Number of extensions: 27195
Number of successful extensions: 77
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 74
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 77
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 98026656
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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