Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV10826X
(338 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_01_1045 - 8241862-8242881 95 1e-20
06_01_0189 + 1470006-1470989 95 1e-20
01_06_0920 - 33009183-33009335,33009421-33009741,33010221-330103... 31 0.23
04_01_0438 - 5723451-5723759,5723795-5723863,5724025-5724210,572... 29 0.70
04_03_0459 + 16159015-16159771,16160251-16160365,16160478-161608... 29 1.2
09_02_0546 - 10454404-10455687 27 2.8
03_06_0432 + 33879916-33880348,33881620-33881936,33882195-338822... 27 2.8
06_01_0418 - 2979418-2981404,2984505-2986469,2987164-2988053 27 3.8
02_02_0178 + 7490447-7490659,7490996-7491112,7491337-7491517,749... 27 3.8
07_03_1267 + 25318220-25318407,25318674-25318844,25319086-253191... 26 6.6
06_03_1309 + 29223197-29223240,29223358-29223592,29223695-292237... 26 6.6
06_03_0576 - 22443668-22444146,22446239-22446393,22447251-224473... 26 6.6
05_01_0198 + 1429396-1430640 26 6.6
10_08_0511 + 18435745-18436499,18436624-18436742,18436788-184373... 26 8.7
08_02_0636 + 19567654-19568859 26 8.7
07_03_1242 + 25113464-25114150 26 8.7
03_01_0504 - 3792170-3792565 26 8.7
02_04_0404 + 22626709-22628601 26 8.7
02_04_0219 + 21007875-21008253,21009774-21009811,21009948-210099... 26 8.7
>06_01_1045 - 8241862-8242881
Length = 339
Score = 95.1 bits (226), Expect = 1e-20
Identities = 47/78 (60%), Positives = 52/78 (66%)
Frame = +3
Query: 3 KADWALQWIASKTATFGERIVAFAAVEXXXXXXXXXXXXWLKKRGLMPGLTFSNGLISRD 182
KADWA++WI F ER+VAFA VE WLKKRGLMPGLTFSN LISRD
Sbjct: 152 KADWAMRWIDGGER-FAERLVAFACVEGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRD 210
Query: 183 EGLHTDFACLMFQHLGQK 236
EGLH DFACL++ L K
Sbjct: 211 EGLHCDFACLLYDLLRGK 228
Score = 39.5 bits (88), Expect = 7e-04
Identities = 21/37 (56%), Positives = 25/37 (67%)
Frame = +2
Query: 224 LRAKGN*GMCLHIVKDAVVIEQEFLTDALPVRLLGMN 334
LR K + IV DAV IE+EF+ DALPV L+GMN
Sbjct: 225 LRGKLDEARVREIVADAVDIEREFVCDALPVALVGMN 261
>06_01_0189 + 1470006-1470989
Length = 327
Score = 95.1 bits (226), Expect = 1e-20
Identities = 47/78 (60%), Positives = 52/78 (66%)
Frame = +3
Query: 3 KADWALQWIASKTATFGERIVAFAAVEXXXXXXXXXXXXWLKKRGLMPGLTFSNGLISRD 182
KADWA++WI F ER+VAFA VE WLKKRGLMPGLTFSN LISRD
Sbjct: 140 KADWAMRWIDGGER-FAERLVAFACVEGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRD 198
Query: 183 EGLHTDFACLMFQHLGQK 236
EGLH DFACL++ L K
Sbjct: 199 EGLHCDFACLLYDLLRGK 216
Score = 39.5 bits (88), Expect = 7e-04
Identities = 21/37 (56%), Positives = 25/37 (67%)
Frame = +2
Query: 224 LRAKGN*GMCLHIVKDAVVIEQEFLTDALPVRLLGMN 334
LR K + IV DAV IE+EF+ DALPV L+GMN
Sbjct: 213 LRGKLDESRVQEIVADAVDIEREFVCDALPVALVGMN 249
>01_06_0920 -
33009183-33009335,33009421-33009741,33010221-33010343,
33010476-33010634,33010720-33011086,33011162-33011315,
33011782-33012874
Length = 789
Score = 31.1 bits (67), Expect = 0.23
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = +2
Query: 32 KQDCNIW*KDCCLCSCRRNLFLRQFCFHLLAQKA 133
KQ+C + D C CSC + L + C H++A A
Sbjct: 214 KQECVLKADDTCHCSCAKPKLLHRPCTHVIAAAA 247
>04_01_0438 -
5723451-5723759,5723795-5723863,5724025-5724210,
5724297-5724558,5724662-5724960,5725040-5725453,
5725533-5725899,5726002-5726146,5726562-5727558
Length = 1015
Score = 29.5 bits (63), Expect = 0.70
Identities = 14/44 (31%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
Frame = +2
Query: 32 KQDCNIW*KDCCLCSCRRNLFLRQFCFHLL--AQKAGPYAGTYI 157
KQ+C + C CSCR+ L + C H++ A + G Y+
Sbjct: 195 KQECVLKDDGTCHCSCRKPTLLHRPCTHVISAASECGIQDAVYV 238
>04_03_0459 +
16159015-16159771,16160251-16160365,16160478-16160844,
16160930-16161244,16161324-16161644,16161730-16161882
Length = 675
Score = 28.7 bits (61), Expect = 1.2
Identities = 12/34 (35%), Positives = 18/34 (52%)
Frame = +2
Query: 32 KQDCNIW*KDCCLCSCRRNLFLRQFCFHLLAQKA 133
KQ+C + C CSC + L + C H++A A
Sbjct: 102 KQECVLKANGTCHCSCAKPKLLHRPCTHVIAAAA 135
>09_02_0546 - 10454404-10455687
Length = 427
Score = 27.5 bits (58), Expect = 2.8
Identities = 14/42 (33%), Positives = 25/42 (59%)
Frame = -2
Query: 169 SPLLNVSPGIRPRFLSQKMEAKLPEKKIPSTAAKATILSPNV 44
+P+LN+S I+P+ + ++A P+ P T+ KA P+V
Sbjct: 53 TPILNLSQ-IQPQVQLEAVQALTPQVSAPPTSQKAPHAMPHV 93
>03_06_0432 +
33879916-33880348,33881620-33881936,33882195-33882281,
33882690-33883253
Length = 466
Score = 27.5 bits (58), Expect = 2.8
Identities = 12/39 (30%), Positives = 17/39 (43%), Gaps = 1/39 (2%)
Frame = +2
Query: 20 TVDCKQDCNIW*K-DCCLCSCRRNLFLRQFCFHLLAQKA 133
T D +C +W + C C+C + C H LA A
Sbjct: 366 TTDITLECTLWPEYHACKCNCNKPYLRHLPCSHALAASA 404
>06_01_0418 - 2979418-2981404,2984505-2986469,2987164-2988053
Length = 1613
Score = 27.1 bits (57), Expect = 3.8
Identities = 18/63 (28%), Positives = 28/63 (44%), Gaps = 6/63 (9%)
Frame = -2
Query: 226 KCWNIRQAKSVCRPSSLEISPLLNVSPGIRPRFLSQKMEAKLPE------KKIPSTAAKA 65
+C + + +CR L+ L N S I PR + + + KK+PS+AA
Sbjct: 1267 RCMSNKNLDCICRFFQLKYLSLRNTSVSILPRLIGNLNHLETLDIRETLIKKLPSSAANL 1326
Query: 64 TIL 56
T L
Sbjct: 1327 TCL 1329
>02_02_0178 +
7490447-7490659,7490996-7491112,7491337-7491517,
7491594-7491679,7491785-7491889,7492059-7492121,
7492404-7492513,7492644-7492763,7492833-7492908,
7493254-7493327,7493474-7493594,7495559-7495656,
7495735-7495858,7496373-7496504
Length = 539
Score = 27.1 bits (57), Expect = 3.8
Identities = 13/30 (43%), Positives = 18/30 (60%)
Frame = +3
Query: 129 KRGLMPGLTFSNGLISRDEGLHTDFACLMF 218
KR L P + F +GLI R G T+F ++F
Sbjct: 439 KRKLYPNVDFYSGLIYRAMGFPTEFFPVLF 468
>07_03_1267 +
25318220-25318407,25318674-25318844,25319086-25319188,
25319394-25319885,25320723-25321156,25321333-25321388,
25321711-25321775,25322139-25322147
Length = 505
Score = 26.2 bits (55), Expect = 6.6
Identities = 10/22 (45%), Positives = 15/22 (68%), Gaps = 1/22 (4%)
Frame = +2
Query: 59 DC-CLCSCRRNLFLRQFCFHLL 121
DC C+C+CR+ F+ C H+L
Sbjct: 409 DCSCICTCRKFEFMGIPCCHML 430
>06_03_1309 + 29223197-29223240,29223358-29223592,29223695-29223783,
29223870-29223968,29224065-29224158,29224297-29224514,
29224861-29224967,29225298-29225472,29225596-29225743,
29226548-29226596,29228016-29228162,29229990-29229996,
29230417-29230482,29230773-29231991,29232073-29233149,
29233226-29233355,29233519-29233617,29233817-29233878,
29234429-29234533
Length = 1389
Score = 26.2 bits (55), Expect = 6.6
Identities = 8/27 (29%), Positives = 18/27 (66%)
Frame = -2
Query: 274 CIFHNMQTHSLVAFCPKCWNIRQAKSV 194
CIF +T+SL + +C+++++ K +
Sbjct: 1102 CIFFKTKTNSLDEYIAECYSVKEFKKI 1128
>06_03_0576 -
22443668-22444146,22446239-22446393,22447251-22447331,
22448475-22448618,22449670-22449695,22449748-22449811,
22449905-22449996,22450550-22450780,22451238-22451678,
22451754-22452293
Length = 750
Score = 26.2 bits (55), Expect = 6.6
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = +2
Query: 62 CCLCSCRRNLFLRQFCFHLLAQKAGP 139
CC CS R L+ ++ C +LA AGP
Sbjct: 489 CCRCSARAVLYSKKRC--MLAYLAGP 512
>05_01_0198 + 1429396-1430640
Length = 414
Score = 26.2 bits (55), Expect = 6.6
Identities = 16/57 (28%), Positives = 28/57 (49%)
Frame = -2
Query: 226 KCWNIRQAKSVCRPSSLEISPLLNVSPGIRPRFLSQKMEAKLPEKKIPSTAAKATIL 56
K W AK C P + ++SP+ P P ++ + ++ LPE+ PS + +L
Sbjct: 275 KLWFGIAAKGECSPCAADLSPVARGEPP-SPGYIWEDLD--LPEEWEPSWGSHLVVL 328
>10_08_0511 +
18435745-18436499,18436624-18436742,18436788-18437372,
18438534-18438667,18439128-18439148,18439656-18439739,
18439832-18440077,18440763-18440925,18441024-18441066,
18441392-18441773,18442212-18442267,18442351-18442417,
18442542-18442721
Length = 944
Score = 25.8 bits (54), Expect = 8.7
Identities = 9/18 (50%), Positives = 11/18 (61%)
Frame = -1
Query: 62 NPFTKCCSLACNPL*SPI 9
NPF+K C + NP PI
Sbjct: 514 NPFSKTCGITVNPFSKPI 531
>08_02_0636 + 19567654-19568859
Length = 401
Score = 25.8 bits (54), Expect = 8.7
Identities = 17/43 (39%), Positives = 26/43 (60%), Gaps = 4/43 (9%)
Frame = -2
Query: 187 PSSLEISP---LLNVS-PGIRPRFLSQKMEAKLPEKKIPSTAA 71
PSS+ +P L++VS PG SQK+ ++P K P+TA+
Sbjct: 41 PSSVPATPVDSLVSVSSPGATSSVDSQKVFDEMPSNKEPTTAS 83
>07_03_1242 + 25113464-25114150
Length = 228
Score = 25.8 bits (54), Expect = 8.7
Identities = 9/20 (45%), Positives = 11/20 (55%)
Frame = +2
Query: 14 GSTVDCKQDCNIW*KDCCLC 73
G C +DC+IW C LC
Sbjct: 142 GECAACHRDCSIWHYRCGLC 161
>03_01_0504 - 3792170-3792565
Length = 131
Score = 25.8 bits (54), Expect = 8.7
Identities = 12/28 (42%), Positives = 13/28 (46%)
Frame = -2
Query: 223 CWNIRQAKSVCRPSSLEISPLLNVSPGI 140
CWN C SS+ S L SPGI
Sbjct: 90 CWNNNPLVPACVASSVRPSWFLTASPGI 117
>02_04_0404 + 22626709-22628601
Length = 630
Score = 25.8 bits (54), Expect = 8.7
Identities = 13/40 (32%), Positives = 22/40 (55%)
Frame = -2
Query: 124 SQKMEAKLPEKKIPSTAAKATILSPNVAVLLAIHCRAQSA 5
++K E KLP+++ + AA A + + L + RAQ A
Sbjct: 481 AKKQEEKLPDQRTAAAAAAAVVATAPPKPLTDLITRAQGA 520
>02_04_0219 +
21007875-21008253,21009774-21009811,21009948-21009976,
21010398-21010443,21010567-21010681,21010790-21010857,
21011780-21011974,21012180-21012281,21012889-21013119,
21013514-21013684
Length = 457
Score = 25.8 bits (54), Expect = 8.7
Identities = 12/28 (42%), Positives = 13/28 (46%)
Frame = -2
Query: 223 CWNIRQAKSVCRPSSLEISPLLNVSPGI 140
CWN C SS+ S L SPGI
Sbjct: 90 CWNNNPLVPACVASSVRPSWFLTASPGI 117
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,250,659
Number of Sequences: 37544
Number of extensions: 179056
Number of successful extensions: 508
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 502
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 506
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 470052804
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -