Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV10826X
(338 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_32960| Best HMM Match : Ribonuc_red_sm (HMM E-Value=0) 111 1e-25
SB_9251| Best HMM Match : Ribonuc_red_sm (HMM E-Value=0) 111 1e-25
SB_18028| Best HMM Match : Ribonuc_red_sm (HMM E-Value=1e-13) 68 2e-12
SB_23533| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.32
SB_25588| Best HMM Match : PAE (HMM E-Value=1.5e-31) 27 3.9
SB_16815| Best HMM Match : TIL (HMM E-Value=0.39) 27 3.9
SB_15809| Best HMM Match : zf-C2H2 (HMM E-Value=0) 27 5.1
SB_6540| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.1
SB_55360| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.1
SB_28448| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.1
SB_9024| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.1
SB_985| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 6.8
SB_44544| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 6.8
SB_16878| Best HMM Match : Keratin_B2 (HMM E-Value=0.19) 26 6.8
SB_31911| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 9.0
SB_57| Best HMM Match : zf-C2H2 (HMM E-Value=0) 26 9.0
SB_30622| Best HMM Match : 7tm_1 (HMM E-Value=9.5e-14) 26 9.0
>SB_32960| Best HMM Match : Ribonuc_red_sm (HMM E-Value=0)
Length = 991
Score = 111 bits (267), Expect = 1e-25
Identities = 53/84 (63%), Positives = 60/84 (71%)
Frame = +3
Query: 3 KADWALQWIASKTATFGERIVAFAAVEXXXXXXXXXXXXWLKKRGLMPGLTFSNGLISRD 182
KA WAL WI + A+FGERI+AFAAVE WLKKRGLMPGLTFSN LISRD
Sbjct: 201 KAHWALNWINPQRASFGERIIAFAAVEGIFFSGSFAAIFWLKKRGLMPGLTFSNELISRD 260
Query: 183 EGLHTDFACLMFQHLGQKATKECV 254
EGLH DFACLM+++L K +E V
Sbjct: 261 EGLHCDFACLMYKYLVNKPDEETV 284
Score = 51.2 bits (117), Expect = 2e-07
Identities = 22/26 (84%), Positives = 25/26 (96%)
Frame = +2
Query: 260 IVKDAVVIEQEFLTDALPVRLLGMNC 337
I+KDAVVIEQEFLT ALPV+L+GMNC
Sbjct: 287 IIKDAVVIEQEFLTSALPVKLIGMNC 312
>SB_9251| Best HMM Match : Ribonuc_red_sm (HMM E-Value=0)
Length = 928
Score = 111 bits (267), Expect = 1e-25
Identities = 53/84 (63%), Positives = 60/84 (71%)
Frame = +3
Query: 3 KADWALQWIASKTATFGERIVAFAAVEXXXXXXXXXXXXWLKKRGLMPGLTFSNGLISRD 182
KA WAL WI + A+FGERI+AFAAVE WLKKRGLMPGLTFSN LISRD
Sbjct: 218 KAHWALNWINPQRASFGERIIAFAAVEGIFFSGSFAAIFWLKKRGLMPGLTFSNELISRD 277
Query: 183 EGLHTDFACLMFQHLGQKATKECV 254
EGLH DFACLM+++L K +E V
Sbjct: 278 EGLHCDFACLMYKYLVNKPDEETV 301
Score = 51.2 bits (117), Expect = 2e-07
Identities = 22/26 (84%), Positives = 25/26 (96%)
Frame = +2
Query: 260 IVKDAVVIEQEFLTDALPVRLLGMNC 337
I+KDAVVIEQEFLT ALPV+L+GMNC
Sbjct: 304 IIKDAVVIEQEFLTSALPVKLIGMNC 329
>SB_18028| Best HMM Match : Ribonuc_red_sm (HMM E-Value=1e-13)
Length = 241
Score = 67.7 bits (158), Expect = 2e-12
Identities = 30/44 (68%), Positives = 37/44 (84%)
Frame = +3
Query: 123 LKKRGLMPGLTFSNGLISRDEGLHTDFACLMFQHLGQKATKECV 254
L+++GLMPGLTFSN LISRDEGLH DFACLM+++L K +E V
Sbjct: 98 LQRKGLMPGLTFSNELISRDEGLHCDFACLMYKYLVNKPDEETV 141
Score = 51.2 bits (117), Expect = 2e-07
Identities = 22/26 (84%), Positives = 25/26 (96%)
Frame = +2
Query: 260 IVKDAVVIEQEFLTDALPVRLLGMNC 337
I+KDAVVIEQEFLT ALPV+L+GMNC
Sbjct: 144 IIKDAVVIEQEFLTSALPVKLIGMNC 169
>SB_23533| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 817
Score = 30.7 bits (66), Expect = 0.32
Identities = 14/46 (30%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
Frame = -2
Query: 313 RERICEKLLLNDYCIFHNMQTHSLVA-FCPKCWNIRQAKSVCRPSS 179
R +C ++ + H ++ H + A +C KC ++RQA +VC S+
Sbjct: 622 RVGVCRTKKRIEFFVGHALRRHYMSAMYCNKCISVRQAVAVCSGSA 667
>SB_25588| Best HMM Match : PAE (HMM E-Value=1.5e-31)
Length = 996
Score = 27.1 bits (57), Expect = 3.9
Identities = 8/19 (42%), Positives = 11/19 (57%)
Frame = +2
Query: 26 DCKQDCNIW*KDCCLCSCR 82
DC + +W + CLC CR
Sbjct: 806 DCDPEVQVWEPNNCLCKCR 824
>SB_16815| Best HMM Match : TIL (HMM E-Value=0.39)
Length = 225
Score = 27.1 bits (57), Expect = 3.9
Identities = 13/29 (44%), Positives = 20/29 (68%)
Frame = -2
Query: 88 IPSTAAKATILSPNVAVLLAIHCRAQSAF 2
I S++AK T +S +V A+ C+A+SAF
Sbjct: 122 IQSSSAKTTQVSSSVTTSDAVICKARSAF 150
>SB_15809| Best HMM Match : zf-C2H2 (HMM E-Value=0)
Length = 935
Score = 26.6 bits (56), Expect = 5.1
Identities = 11/29 (37%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
Frame = -2
Query: 304 ICEKLLLNDYCIFHNMQTHSLVAF-CPKC 221
ICEK+ N + + +++TH+ F CP+C
Sbjct: 122 ICEKVYSNKHYLRDHIRTHNPDGFKCPEC 150
>SB_6540| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 366
Score = 26.6 bits (56), Expect = 5.1
Identities = 15/69 (21%), Positives = 32/69 (46%)
Frame = -2
Query: 265 HNMQTHSLVAFCPKCWNIRQAKSVCRPSSLEISPLLNVSPGIRPRFLSQKMEAKLPEKKI 86
H +Q + + +N+R ++S + LE +N +R + L+ + +LP+ +
Sbjct: 86 HTLQPRKCLDEVAEVYNVRASRSSECMTHLEDEVTVNCDGDMRQKRLTPLTQTELPKMET 145
Query: 85 PSTAAKATI 59
STA +
Sbjct: 146 QSTARNRAV 154
>SB_55360| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1646
Score = 26.6 bits (56), Expect = 5.1
Identities = 14/37 (37%), Positives = 19/37 (51%)
Frame = -2
Query: 217 NIRQAKSVCRPSSLEISPLLNVSPGIRPRFLSQKMEA 107
N+ QA S C+P S LNV P ++ QK E+
Sbjct: 469 NLAQAPSNCKPKSAVCPTTLNVDWWEIPPYIYQKKES 505
>SB_28448| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1333
Score = 26.6 bits (56), Expect = 5.1
Identities = 10/22 (45%), Positives = 15/22 (68%)
Frame = -2
Query: 208 QAKSVCRPSSLEISPLLNVSPG 143
+ K+ C+P +E+SP L V PG
Sbjct: 452 EVKAECKPFYIEVSPALLVIPG 473
>SB_9024| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 455
Score = 26.6 bits (56), Expect = 5.1
Identities = 10/24 (41%), Positives = 16/24 (66%)
Frame = -1
Query: 173 NKSITECKSRHKAPLFEPEDGSKT 102
N +++ CK+R PL P +G+KT
Sbjct: 84 NGTLSSCKARDCGPLATPTNGTKT 107
>SB_985| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 225
Score = 26.2 bits (55), Expect = 6.8
Identities = 9/19 (47%), Positives = 10/19 (52%)
Frame = -1
Query: 86 SFYSCKGNNPFTKCCSLAC 30
S Y C N F CCS +C
Sbjct: 58 SDYDCNSNGNFLNCCSNSC 76
>SB_44544| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1480
Score = 26.2 bits (55), Expect = 6.8
Identities = 11/39 (28%), Positives = 19/39 (48%)
Frame = -2
Query: 235 FCPKCWNIRQAKSVCRPSSLEISPLLNVSPGIRPRFLSQ 119
FC +C ++ Q S+C P + + VS +R S+
Sbjct: 866 FCTRCQSLTQPCSICNPENRLLDRRGRVSISVRKHLCSR 904
>SB_16878| Best HMM Match : Keratin_B2 (HMM E-Value=0.19)
Length = 413
Score = 26.2 bits (55), Expect = 6.8
Identities = 9/19 (47%), Positives = 10/19 (52%)
Frame = -1
Query: 86 SFYSCKGNNPFTKCCSLAC 30
S Y C N F CCS +C
Sbjct: 254 SDYDCNSNGNFLNCCSNSC 272
>SB_31911| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1312
Score = 25.8 bits (54), Expect = 9.0
Identities = 9/16 (56%), Positives = 12/16 (75%)
Frame = -1
Query: 161 TECKSRHKAPLFEPED 114
TEC+S + P F+PED
Sbjct: 1094 TECQSTDEDPFFDPED 1109
>SB_57| Best HMM Match : zf-C2H2 (HMM E-Value=0)
Length = 1498
Score = 25.8 bits (54), Expect = 9.0
Identities = 10/38 (26%), Positives = 20/38 (52%)
Frame = -2
Query: 334 VHTEQSYRERICEKLLLNDYCIFHNMQTHSLVAFCPKC 221
V + +++ C+K LL+ Y + ++ TH+ C C
Sbjct: 849 VQAKGNFKCEQCDKSLLSQYYLKRHLLTHTRSPSCASC 886
>SB_30622| Best HMM Match : 7tm_1 (HMM E-Value=9.5e-14)
Length = 856
Score = 25.8 bits (54), Expect = 9.0
Identities = 12/43 (27%), Positives = 20/43 (46%)
Frame = -2
Query: 280 DYCIFHNMQTHSLVAFCPKCWNIRQAKSVCRPSSLEISPLLNV 152
D CI + CP+C ++ Q K+ LE+ P ++V
Sbjct: 416 DSCIIKLSRLQKTQVACPECQHVTQLKAEGIAGVLELQPNVHV 458
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,938,371
Number of Sequences: 59808
Number of extensions: 215740
Number of successful extensions: 560
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 512
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 560
length of database: 16,821,457
effective HSP length: 73
effective length of database: 12,455,473
effective search space used: 485763447
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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