Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10826X
         (338 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z35637-2|CAA84688.1|  381|Caenorhabditis elegans Hypothetical pr...   109   4e-25
U51997-5|AAG24065.1|  668|Caenorhabditis elegans Hypothetical pr...    71   3e-13
Z35598-1|CAA84656.1| 1343|Caenorhabditis elegans Hypothetical pr...    27   2.6  
Z77131-3|CAB00855.1|  156|Caenorhabditis elegans Hypothetical pr...    27   3.4  
AC098856-6|AAR12981.1|   93|Caenorhabditis elegans Hypothetical ...    27   3.4  
U88184-14|AAK31520.1|  821|Caenorhabditis elegans Hypothetical p...    26   7.9  
U12964-3|AAA91222.2| 1032|Caenorhabditis elegans Nhl (ring finge...    26   7.9  

>Z35637-2|CAA84688.1|  381|Caenorhabditis elegans Hypothetical
           protein C03C10.3 protein.
          Length = 381

 Score =  109 bits (263), Expect = 4e-25
 Identities = 50/82 (60%), Positives = 60/82 (73%)
 Frame = +3

Query: 3   KADWALQWIASKTATFGERIVAFAAVEXXXXXXXXXXXXWLKKRGLMPGLTFSNGLISRD 182
           KADWAL+WI+ K A+F ER++AFAAVE            WLKKRGLMPGLT SN LISRD
Sbjct: 198 KADWALRWISDKKASFAERLIAFAAVEGIFFSGSFASIFWLKKRGLMPGLTHSNELISRD 257

Query: 183 EGLHTDFACLMFQHLGQKATKE 248
           EGLH DFACL++  L +K T++
Sbjct: 258 EGLHRDFACLLYSKLQKKLTQQ 279



 Score = 48.0 bits (109), Expect = 2e-06
 Identities = 20/26 (76%), Positives = 24/26 (92%)
 Frame = +2

Query: 260 IVKDAVVIEQEFLTDALPVRLLGMNC 337
           I+KDAV IEQEFLT+ALPV ++GMNC
Sbjct: 284 IIKDAVAIEQEFLTEALPVDMIGMNC 309


>U51997-5|AAG24065.1|  668|Caenorhabditis elegans Hypothetical
           protein F19G12.2 protein.
          Length = 668

 Score = 70.5 bits (165), Expect = 3e-13
 Identities = 33/58 (56%), Positives = 37/58 (63%)
 Frame = +3

Query: 3   KADWALQWIASKTATFGERIVAFAAVEXXXXXXXXXXXXWLKKRGLMPGLTFSNGLIS 176
           KADW L+WI+   A F ER+ AFAAVE            WLKKRGL+PGLT SN LIS
Sbjct: 485 KADWCLRWISDHNAPFSERLAAFAAVEGIFFSSSFAAIFWLKKRGLLPGLTHSNELIS 542



 Score = 33.5 bits (73), Expect = 0.040
 Identities = 11/25 (44%), Positives = 21/25 (84%)
 Frame = +2

Query: 260 IVKDAVVIEQEFLTDALPVRLLGMN 334
           I+ ++V++EQ+F+ ++LP  L+GMN
Sbjct: 571 IINESVLVEQDFVRESLPTNLIGMN 595


>Z35598-1|CAA84656.1| 1343|Caenorhabditis elegans Hypothetical
           protein F10F2.2 protein.
          Length = 1343

 Score = 27.5 bits (58), Expect = 2.6
 Identities = 15/38 (39%), Positives = 23/38 (60%), Gaps = 3/38 (7%)
 Frame = -2

Query: 250 HSLVAFCPKCWNIRQAKSVC--RPSS-LEISPLLNVSP 146
           +SL+AFC     IR  +SVC  RP+    +SP++ + P
Sbjct: 255 NSLIAFCDNSSAIRGFESVCRLRPNDPTTVSPMIAIFP 292


>Z77131-3|CAB00855.1|  156|Caenorhabditis elegans Hypothetical
           protein C54C6.4 protein.
          Length = 156

 Score = 27.1 bits (57), Expect = 3.4
 Identities = 11/34 (32%), Positives = 19/34 (55%)
 Frame = -2

Query: 307 RICEKLLLNDYCIFHNMQTHSLVAFCPKCWNIRQ 206
           ++C  L L+ +C+ +   T S V FC  C+ + Q
Sbjct: 96  QLCSNLSLHYFCMSNIRMTFSFVYFCFFCFRLLQ 129


>AC098856-6|AAR12981.1|   93|Caenorhabditis elegans Hypothetical
           protein Y37F4.7 protein.
          Length = 93

 Score = 27.1 bits (57), Expect = 3.4
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = -2

Query: 229 PKCWNIRQAKSVCRPSSLEISPLLNVSPGIRPRFLS 122
           P  WN+RQ +    P+ + ++P+  +SP   PR  S
Sbjct: 8   PHQWNLRQYRRWI-PADVHVNPISQLSPESAPRMRS 42


>U88184-14|AAK31520.1|  821|Caenorhabditis elegans Hypothetical
           protein F36H5.1 protein.
          Length = 821

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 10/18 (55%), Positives = 11/18 (61%)
 Frame = +2

Query: 11  LGSTVDCKQDCNIW*KDC 64
           LG +V C Q  N W KDC
Sbjct: 49  LGVSVYCSQTSNTWIKDC 66


>U12964-3|AAA91222.2| 1032|Caenorhabditis elegans Nhl (ring finger
           b-box coiled coil)domain containing protein 2 protein.
          Length = 1032

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 20/61 (32%), Positives = 27/61 (44%)
 Frame = +1

Query: 142 CRDLHSVMDLFPGMKVCIQILLV*CSNT*GKRQLRNVSAYCERCSSH*ARVSHRCAPCKT 321
           C   H+VM+LF G  V     L          +LR V      CS+H   + + CA C+T
Sbjct: 202 CTTAHTVMNLFQGHTVTTFADL---RQPGAHPELRQVM-----CSTHNQHMRYLCAACET 253

Query: 322 A 324
           A
Sbjct: 254 A 254


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,025,424
Number of Sequences: 27780
Number of extensions: 164476
Number of successful extensions: 468
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 455
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 468
length of database: 12,740,198
effective HSP length: 72
effective length of database: 10,740,038
effective search space used: 429601520
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)