Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV10826X
(338 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g27060.1 68416.m03385 ribonucleoside-diphosphate reductase sm... 100 5e-22
At3g23580.1 68416.m02966 ribonucleoside-diphosphate reductase sm... 92 1e-19
At5g40942.1 68418.m04973 ribonucleoside-diphosphate reductase sm... 33 0.049
At1g04860.1 68414.m00482 ubiquitin-specific protease 2 (UBP2) id... 30 0.34
At3g26240.1 68416.m03274 DC1 domain-containing protein contains ... 29 0.79
At5g10560.1 68418.m01222 glycosyl hydrolase family 3 protein bet... 27 3.2
At4g10060.1 68417.m01645 expressed protein contains Pfam domain ... 27 3.2
At1g12300.1 68414.m01422 pentatricopeptide (PPR) repeat-containi... 27 3.2
At3g17450.1 68416.m02228 hAT dimerisation domain-containing prot... 26 5.6
At1g53580.2 68414.m06085 hydroxyacylglutathione hydrolase, putat... 26 5.6
At1g53580.1 68414.m06084 hydroxyacylglutathione hydrolase, putat... 26 5.6
At5g50870.1 68418.m06304 ubiquitin-conjugating enzyme, putative ... 26 7.4
At4g39350.1 68417.m05570 cellulose synthase, catalytic subunit (... 25 9.7
At4g13710.1 68417.m02129 pectate lyase family protein 25 9.7
At4g02330.1 68417.m00317 pectinesterase family protein contains ... 25 9.7
At2g21770.1 68415.m02588 cellulose synthase, catalytic subunit, ... 25 9.7
>At3g27060.1 68416.m03385 ribonucleoside-diphosphate reductase small
chain, putative / ribonucleotide reductase, putative
similar to ribonucleotide reductase R2 [Nicotiana
tabacum] GI:1044912; contains Pfam profile PF00268:
Ribonucleotide reductase, small chain
Length = 332
Score = 99.5 bits (237), Expect = 5e-22
Identities = 49/84 (58%), Positives = 57/84 (67%)
Frame = +3
Query: 3 KADWALQWIASKTATFGERIVAFAAVEXXXXXXXXXXXXWLKKRGLMPGLTFSNGLISRD 182
KA WA++WI + TF ERI+AFA VE WLKKRGLMPGLTFSN LISRD
Sbjct: 144 KAQWAMKWIDG-SQTFAERIIAFACVEGIFFSGSFCSIFWLKKRGLMPGLTFSNELISRD 202
Query: 183 EGLHTDFACLMFQHLGQKATKECV 254
EGLH DFACL++ L K ++E V
Sbjct: 203 EGLHCDFACLLYTLLKTKLSEERV 226
Score = 35.9 bits (79), Expect = 0.007
Identities = 17/25 (68%), Positives = 20/25 (80%)
Frame = +2
Query: 260 IVKDAVVIEQEFLTDALPVRLLGMN 334
IV DAV IE+EF+ DALP L+GMN
Sbjct: 229 IVCDAVEIEREFVCDALPCALVGMN 253
>At3g23580.1 68416.m02966 ribonucleoside-diphosphate reductase small
chain / ribonucleotide reductase nearly identical to
SP|P50651 Ribonucleoside-diphosphate reductase small
chain (EC 1.17.4.1) (Ribonucleotide reductase) (R2
subunit) {Arabidopsis thaliana}
Length = 341
Score = 91.9 bits (218), Expect = 1e-19
Identities = 47/84 (55%), Positives = 53/84 (63%)
Frame = +3
Query: 3 KADWALQWIASKTATFGERIVAFAAVEXXXXXXXXXXXXWLKKRGLMPGLTFSNGLISRD 182
KA W L WI S + F R+VAFA VE WLKKRGLMPGLTFSN LISRD
Sbjct: 155 KAKWCLDWIQSPMS-FAVRLVAFACVEGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRD 213
Query: 183 EGLHTDFACLMFQHLGQKATKECV 254
EGLH DFACL++ L ++ E V
Sbjct: 214 EGLHCDFACLLYSLLQKQLPLEKV 237
Score = 31.5 bits (68), Expect = 0.15
Identities = 15/25 (60%), Positives = 18/25 (72%)
Frame = +2
Query: 260 IVKDAVVIEQEFLTDALPVRLLGMN 334
IV +AV IE EF+ ALP L+GMN
Sbjct: 240 IVHEAVEIETEFVCKALPCDLIGMN 264
>At5g40942.1 68418.m04973 ribonucleoside-diphosphate reductase small
chain, putative / ribonucleotide reductase, putative
similar to ribonucleotide reductase R2 [Nicotiana
tabacum] GI:1044912; contains Pfam profile PF00268:
Ribonucleotide reductase, small chain
Length = 231
Score = 33.1 bits (72), Expect = 0.049
Identities = 19/37 (51%), Positives = 23/37 (62%)
Frame = +2
Query: 224 LRAKGN*GMCLHIVKDAVVIEQEFLTDALPVRLLGMN 334
LR K + IV DAV IE+EF+ DAL L+GMN
Sbjct: 115 LRTKFDEDRLKAIVCDAVEIEREFVCDALSCALVGMN 151
>At1g04860.1 68414.m00482 ubiquitin-specific protease 2 (UBP2)
identical to GI:11993463
Length = 961
Score = 30.3 bits (65), Expect = 0.34
Identities = 19/68 (27%), Positives = 36/68 (52%)
Frame = -2
Query: 256 QTHSLVAFCPKCWNIRQAKSVCRPSSLEISPLLNVSPGIRPRFLSQKMEAKLPEKKIPST 77
+T S+V+ C +C + + SL + SP +P+ +S+ +AKLP K++P
Sbjct: 358 ETSSIVS-CMECGHSSKVYEPFLDLSLPVP--FKKSPPKKPQPVSRAKKAKLPPKRVPKN 414
Query: 76 AAKATILS 53
+K + +S
Sbjct: 415 VSKVSKVS 422
>At3g26240.1 68416.m03274 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 922
Score = 29.1 bits (62), Expect = 0.79
Identities = 19/76 (25%), Positives = 31/76 (40%), Gaps = 6/76 (7%)
Frame = -2
Query: 304 ICEKLLLNDYCIFHNMQ------THSLVAFCPKCWNIRQAKSVCRPSSLEISPLLNVSPG 143
+C + + NDY +H ++ HS A P W+ + + E+ P L +S G
Sbjct: 537 VCRRKINNDYGGYHCIKKGCLYAVHSKCATQPNVWDGIEREGESEEEVEELEPFLTISDG 596
Query: 142 IRPRFLSQKMEAKLPE 95
I F + L E
Sbjct: 597 IIQHFSHEHHHLTLDE 612
>At5g10560.1 68418.m01222 glycosyl hydrolase family 3 protein
beta-xylosidase, Aspergllus nidulans, EMBL:ANXLND
Length = 792
Score = 27.1 bits (57), Expect = 3.2
Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
Frame = -2
Query: 193 CRPSSLEISPLLNVSPGIRPRFLSQKMEAKLPEK--KIPSTAA 71
C+P P NVS I+ R +S LPEK ++ +TAA
Sbjct: 32 CKPPHFSSYPFCNVSLSIKQRAISLVSLLMLPEKIGQLSNTAA 74
>At4g10060.1 68417.m01645 expressed protein contains Pfam domain
PF04685: Protein of unknown function, DUF608
Length = 912
Score = 27.1 bits (57), Expect = 3.2
Identities = 9/17 (52%), Positives = 13/17 (76%)
Frame = +3
Query: 6 ADWALQWIASKTATFGE 56
A WA+QW ++T +FGE
Sbjct: 839 AIWAIQWALTRTQSFGE 855
>At1g12300.1 68414.m01422 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 637
Score = 27.1 bits (57), Expect = 3.2
Identities = 13/46 (28%), Positives = 25/46 (54%)
Frame = -2
Query: 193 CRPSSLEISPLLNVSPGIRPRFLSQKMEAKLPEKKIPSTAAKATIL 56
C+P+++ P+LNV L+ ++ K+ E+ I A K +I+
Sbjct: 224 CQPNAVTYGPVLNVMCKSGQTALAMELLRKMEERNIKLDAVKYSII 269
>At3g17450.1 68416.m02228 hAT dimerisation domain-containing protein
contains Pfam profile PF04937: Protein of unknown
function (DUF 659)
Length = 877
Score = 26.2 bits (55), Expect = 5.6
Identities = 13/29 (44%), Positives = 15/29 (51%)
Frame = +1
Query: 250 VSAYCERCSSH*ARVSHRCAPCKTARYEL 336
VS R H AR+ APCKTA E+
Sbjct: 158 VSGGINRFKQHLARIPGEVAPCKTAPEEV 186
>At1g53580.2 68414.m06085 hydroxyacylglutathione hydrolase, putative
/ glyoxalase II, putative similar to glyoxalase II
GI:1644427 from (Arabidopsis thaliana)
Length = 256
Score = 26.2 bits (55), Expect = 5.6
Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Frame = -1
Query: 218 EHQTSKICMQTFIPGNKSITECKSRHKAPLF-EPED 114
+H T ++T +PG KS+ S KA LF EP D
Sbjct: 76 DHVTGTGLLKTKLPGVKSVISKASGSKADLFLEPGD 111
>At1g53580.1 68414.m06084 hydroxyacylglutathione hydrolase, putative
/ glyoxalase II, putative similar to glyoxalase II
GI:1644427 from (Arabidopsis thaliana)
Length = 256
Score = 26.2 bits (55), Expect = 5.6
Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Frame = -1
Query: 218 EHQTSKICMQTFIPGNKSITECKSRHKAPLF-EPED 114
+H T ++T +PG KS+ S KA LF EP D
Sbjct: 76 DHVTGTGLLKTKLPGVKSVISKASGSKADLFLEPGD 111
>At5g50870.1 68418.m06304 ubiquitin-conjugating enzyme, putative
strong similarity to ubiquitin conjugating enzyme
[Lycopersicon esculentum] GI:886679; contains Pfam
profile PF00179: Ubiquitin-conjugating enzyme
Length = 192
Score = 25.8 bits (54), Expect = 7.4
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = +1
Query: 67 PLQL*KESFSQAVLLPSSGSKSGALCRDL 153
P + K FS V P+ S+SGA+C D+
Sbjct: 63 PFEPPKMQFSTKVWHPNISSQSGAICLDI 91
>At4g39350.1 68417.m05570 cellulose synthase, catalytic subunit
(Ath-A) identical to gi:2827141
Length = 1084
Score = 25.4 bits (53), Expect = 9.7
Identities = 8/11 (72%), Positives = 8/11 (72%)
Frame = +2
Query: 41 CNIW*KDCCLC 73
CN W K CCLC
Sbjct: 659 CNCWPKWCCLC 669
>At4g13710.1 68417.m02129 pectate lyase family protein
Length = 470
Score = 25.4 bits (53), Expect = 9.7
Identities = 11/31 (35%), Positives = 16/31 (51%)
Frame = -1
Query: 137 APLFEPEDGSKTA*EKDSFYSCKGNNPFTKC 45
A L + + ++TA K F+SC NP C
Sbjct: 97 AKLVQMSEQNRTARRKLGFFSCGTGNPIDDC 127
>At4g02330.1 68417.m00317 pectinesterase family protein contains
Pfam profile: PF01095 pectinesterase
Length = 573
Score = 25.4 bits (53), Expect = 9.7
Identities = 12/25 (48%), Positives = 14/25 (56%)
Frame = -1
Query: 221 LEHQTSKICMQTFIPGNKSITECKS 147
L QT I QT +P N S T CK+
Sbjct: 13 LSLQTLFIASQTLLPSNSSSTICKT 37
>At2g21770.1 68415.m02588 cellulose synthase, catalytic subunit,
putative similar to gi:2827141 cellulose synthase
catalytic subunit, Arabidopsis thaliana (Ath-A)
Length = 1088
Score = 25.4 bits (53), Expect = 9.7
Identities = 8/11 (72%), Positives = 8/11 (72%)
Frame = +2
Query: 41 CNIW*KDCCLC 73
CN W K CCLC
Sbjct: 664 CNCWPKWCCLC 674
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,528,202
Number of Sequences: 28952
Number of extensions: 148214
Number of successful extensions: 395
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 385
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 393
length of database: 12,070,560
effective HSP length: 72
effective length of database: 9,986,016
effective search space used: 399440640
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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