Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10825
         (427 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC36.05c |clr6||histone deacetylase |Schizosaccharomyces pombe...    29   0.30 
SPAC17C9.03 |tif471||translation initiation factor eIF4G |Schizo...    27   1.6  
SPAC26A3.15c |nsp1||nucleoporin Nsp1|Schizosaccharomyces pombe|c...    25   3.7  
SPBP4G3.03 |||PI31 proteasome regulator related|Schizosaccharomy...    24   8.6  
SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces...    24   8.6  
SPBC119.12 |||Golgi matrix protein |Schizosaccharomyces pombe|ch...    24   8.6  

>SPBC36.05c |clr6||histone deacetylase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 405

 Score = 29.1 bits (62), Expect = 0.30
 Identities = 20/64 (31%), Positives = 31/64 (48%), Gaps = 4/64 (6%)
 Frame = +2

Query: 185 KVPNMYFKDIFIYHEGERFPYKFIFLRMTHSLM----LFQKIKFK*TDEFCIRNIQRKCK 352
           KV   Y +D+  YH G + P K   +RM H+L+    L++K+    T     RN   +C 
Sbjct: 7   KVSYFYDEDVGNYHYGPQHPMKPHRVRMVHNLVVNYNLYEKLNVI-TPVRATRNDMTRCH 65

Query: 353 NFKY 364
             +Y
Sbjct: 66  TDEY 69


>SPAC17C9.03 |tif471||translation initiation factor eIF4G
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1403

 Score = 26.6 bits (56), Expect = 1.6
 Identities = 24/74 (32%), Positives = 31/74 (41%), Gaps = 1/74 (1%)
 Frame = -2

Query: 243 GNRSPSW*MKISLKYMLG-TLNNASTTGRSRGKPRGLLSRTKDSKGAKSLPLLSNG*TKT 67
           GN  PS+  K S  Y  G   NN+       G PR   SR   +        +SNG +  
Sbjct: 308 GNSHPSY-NKYS-HYQHGFNYNNSGNNRNESGHPRFRNSRRNYNNQGAYPTYMSNGRSAN 365

Query: 66  KSWNGNPPSVPLGS 25
           +S   NP +V  GS
Sbjct: 366 QSPRNNPQNVNNGS 379


>SPAC26A3.15c |nsp1||nucleoporin Nsp1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 598

 Score = 25.4 bits (53), Expect = 3.7
 Identities = 13/34 (38%), Positives = 16/34 (47%)
 Frame = -2

Query: 180 NASTTGRSRGKPRGLLSRTKDSKGAKSLPLLSNG 79
           +A TTG S GKP G  + T   KG  +      G
Sbjct: 264 SAPTTGFSFGKPAGQAASTATDKGTTTTSSAGTG 297


>SPBP4G3.03 |||PI31 proteasome regulator related|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 241

 Score = 24.2 bits (50), Expect = 8.6
 Identities = 9/28 (32%), Positives = 18/28 (64%)
 Frame = -2

Query: 363 YLKFLHFLWILRMQNSSVYLNLIFWNNI 280
           +++ L F +++  Q+  + L LIFWN +
Sbjct: 44  FIESLQFHYLIN-QSEKISLKLIFWNEL 70


>SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1727

 Score = 24.2 bits (50), Expect = 8.6
 Identities = 20/77 (25%), Positives = 37/77 (48%), Gaps = 6/77 (7%)
 Frame = -1

Query: 220 NENILEIHVRNLE*CINNGAIQREA----KRLIVKNKRFERSQVLAF--VVEWIDENKEL 59
           N N L   ++NLE  +N+  I+ E+    + L+ +     RS +L+       ID+  + 
Sbjct: 581 NSNTLSEQIKNLESELNSSKIKNESLLNERNLLKEMLATSRSSILSHNSSAGNIDDKMKS 640

Query: 58  EWESTFSTSRQHESFRH 8
             EST    + +E +R+
Sbjct: 641 IDESTRELEKNYEVYRN 657


>SPBC119.12 |||Golgi matrix protein |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 401

 Score = 24.2 bits (50), Expect = 8.6
 Identities = 9/21 (42%), Positives = 15/21 (71%)
 Frame = -1

Query: 124 KRFERSQVLAFVVEWIDENKE 62
           KRFE  Q+++ V++W D  +E
Sbjct: 341 KRFEILQLISSVLDWNDTQRE 361


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,684,542
Number of Sequences: 5004
Number of extensions: 35385
Number of successful extensions: 80
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 80
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 80
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 152416050
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)