Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10825
         (427 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_0978 - 29358778-29358857,29359149-29359289,29359375-293594...    28   3.6  
03_02_0649 - 10162202-10162366,10162455-10162533,10162614-101626...    27   4.8  

>03_05_0978 -
           29358778-29358857,29359149-29359289,29359375-29359468,
           29360931-29361170,29361438-29361488,29361850-29361936,
           29362189-29362256,29362393-29362447,29362569-29362630,
           29362751-29362951,29363043-29363202,29363294-29363482
          Length = 475

 Score = 27.9 bits (59), Expect = 3.6
 Identities = 10/36 (27%), Positives = 18/36 (50%)
 Frame = -2

Query: 345 FLWILRMQNSSVYLNLIFWNNIRLCVIRRKMNL*GN 238
           F W++ +    V L++  W  ++LC   R   + GN
Sbjct: 283 FYWVINILQVPVALSVFLWEGVQLCRESRARRMDGN 318


>03_02_0649 -
           10162202-10162366,10162455-10162533,10162614-10162670,
           10162741-10162847,10163365-10163580,10163690-10163734,
           10164100-10164258,10164714-10164818,10164902-10165084,
           10165490-10165546,10165625-10165720,10166970-10167104,
           10167188-10167262,10167380-10167479,10167682-10167842,
           10167921-10168068,10168706-10169111,10169794-10169860,
           10169953-10170162,10170570-10170711,10170809-10170870,
           10170965-10171037,10171876-10171985,10172087-10172227
          Length = 1032

 Score = 27.5 bits (58), Expect = 4.8
 Identities = 17/42 (40%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
 Frame = +2

Query: 38  TEGGFPFQLFVFVYPFDNKGKDLAPF-ESFVLDNKPLGFPLD 160
           TE   P    +F+  FDN G  LAPF  S + D K +  PL+
Sbjct: 433 TEKRRPCAEALFIILFDNYGVQLAPFVASIIHDVKAVSPPLE 474


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,296,591
Number of Sequences: 37544
Number of extensions: 212807
Number of successful extensions: 506
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 501
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 506
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 790518168
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)