Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10825
         (427 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL117195-14|CAB55024.1|  140|Caenorhabditis elegans Hypothetical...    30   0.80 
Z66500-1|CAA91303.1|  325|Caenorhabditis elegans Hypothetical pr...    27   4.3  
Z49888-1|CAA90064.1| 3498|Caenorhabditis elegans Hypothetical pr...    27   5.6  
AF000299-2|AAC47981.2|  324|Caenorhabditis elegans Serpentine re...    27   5.6  
Z81513-6|CAB04176.1|  341|Caenorhabditis elegans Hypothetical pr...    26   9.8  

>AL117195-14|CAB55024.1|  140|Caenorhabditis elegans Hypothetical
           protein Y57A10A.21 protein.
          Length = 140

 Score = 29.9 bits (64), Expect = 0.80
 Identities = 18/56 (32%), Positives = 28/56 (50%)
 Frame = +2

Query: 233 ERFPYKFIFLRMTHSLMLFQKIKFK*TDEFCIRNIQRKCKNFKYNCYDLEKIKSSR 400
           E FP K  F +   +   FQK++ K    F I  I  K   F++ C+++EK +  R
Sbjct: 21  EHFPEKLCFSKKNWA---FQKLQKKSFFRFKINQIAEKL--FRWTCFEIEKYREDR 71


>Z66500-1|CAA91303.1|  325|Caenorhabditis elegans Hypothetical
           protein T05C12.1 protein.
          Length = 325

 Score = 27.5 bits (58), Expect = 4.3
 Identities = 8/18 (44%), Positives = 15/18 (83%)
 Frame = -1

Query: 103 VLAFVVEWIDENKELEWE 50
           +LA+ V+++D+N E EW+
Sbjct: 304 ILAYCVKFVDDNAEFEWD 321


>Z49888-1|CAA90064.1| 3498|Caenorhabditis elegans Hypothetical protein
            F47A4.2 protein.
          Length = 3498

 Score = 27.1 bits (57), Expect = 5.6
 Identities = 9/27 (33%), Positives = 17/27 (62%)
 Frame = -3

Query: 179  MHQQRGDPEGSQEAYCQEQKIRKEPSP 99
            M+Q   +P+G  ++Y Q+Q +  +P P
Sbjct: 2949 MNQGSSNPQGGMQSYQQQQPVLGQPGP 2975


>AF000299-2|AAC47981.2|  324|Caenorhabditis elegans Serpentine
           receptor, class z protein24, isoform b protein.
          Length = 324

 Score = 27.1 bits (57), Expect = 5.6
 Identities = 20/77 (25%), Positives = 35/77 (45%)
 Frame = +2

Query: 134 NKPLGFPLDRPVVDALFKVPNMYFKDIFIYHEGERFPYKFIFLRMTHSLMLFQKIKFK*T 313
           NK   + + + V   +FK   +    IF+Y   + F +  I +    S  L  +I +   
Sbjct: 221 NKSQQYLIWQTVFILIFKTTILMLIIIFLYDSEQAFVFHIIMVTDVMSTPLIVQISYLCN 280

Query: 314 DEFCIRNIQRKCKNFKY 364
           ++   RNI+   KNFK+
Sbjct: 281 NK---RNIRTLFKNFKF 294


>Z81513-6|CAB04176.1|  341|Caenorhabditis elegans Hypothetical
           protein F26D2.7 protein.
          Length = 341

 Score = 26.2 bits (55), Expect = 9.8
 Identities = 11/33 (33%), Positives = 20/33 (60%)
 Frame = -1

Query: 145 KRLIVKNKRFERSQVLAFVVEWIDENKELEWES 47
           + +I KN  FE S V  F++   +EN  ++W++
Sbjct: 163 REVIRKNFDFEISSVARFIMMPYNENNTIQWKA 195


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,225,738
Number of Sequences: 27780
Number of extensions: 201186
Number of successful extensions: 505
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 493
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 505
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 703342068
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)