Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10825
         (427 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g59570.1 68416.m06647 RabGAP/TBC domain-containing protein si...    31   0.43 
At4g19490.2 68417.m02867 expressed protein                             27   4.0  
At4g19490.1 68417.m02866 expressed protein                             27   4.0  
At1g69420.2 68414.m07975 zinc finger (DHHC type) family protein ...    27   4.0  
At1g69420.1 68414.m07974 zinc finger (DHHC type) family protein ...    27   4.0  
At5g05730.1 68418.m00630 anthranilate synthase, alpha subunit, c...    27   7.0  
At1g36970.1 68414.m04608 hypothetical protein                          27   7.0  

>At3g59570.1 68416.m06647 RabGAP/TBC domain-containing protein
           similar to GTPase activating protein [Yarrowia
           lipolytica] GI:2370595; contains Pfam profile PF00566:
           TBC domain
          Length = 720

 Score = 30.7 bits (66), Expect = 0.43
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = +2

Query: 119 SFVLDNKPLGFPLDRPVVDALFKVPNMYFKDIF 217
           SFV  + P GFP   P  D +F  P++   D+F
Sbjct: 213 SFVPPSSPYGFPSPGPFADDIFDFPSLPVTDLF 245


>At4g19490.2 68417.m02867 expressed protein
          Length = 1054

 Score = 27.5 bits (58), Expect = 4.0
 Identities = 13/40 (32%), Positives = 22/40 (55%)
 Frame = +2

Query: 179 LFKVPNMYFKDIFIYHEGERFPYKFIFLRMTHSLMLFQKI 298
           L +VP++YFK+ F   +G  F     F  +  +L L +K+
Sbjct: 143 LREVPSLYFKEDFALEDGATFRSACPFSSLNENLALQEKL 182


>At4g19490.1 68417.m02866 expressed protein
          Length = 1054

 Score = 27.5 bits (58), Expect = 4.0
 Identities = 13/40 (32%), Positives = 22/40 (55%)
 Frame = +2

Query: 179 LFKVPNMYFKDIFIYHEGERFPYKFIFLRMTHSLMLFQKI 298
           L +VP++YFK+ F   +G  F     F  +  +L L +K+
Sbjct: 143 LREVPSLYFKEDFALEDGATFRSACPFSSLNENLALQEKL 182


>At1g69420.2 68414.m07975 zinc finger (DHHC type) family protein
           contains Pfam profile: PF01529: DHHC zinc finger domain
          Length = 596

 Score = 27.5 bits (58), Expect = 4.0
 Identities = 12/30 (40%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
 Frame = -3

Query: 356 SFYIFFG-YYGCKIHQFI*I*FFGTTLDCV 270
           +FY+FF  + G KIHQ+I +  +   + CV
Sbjct: 27  AFYVFFAPFVGKKIHQYIAMGIYTPLITCV 56


>At1g69420.1 68414.m07974 zinc finger (DHHC type) family protein
           contains Pfam profile: PF01529: DHHC zinc finger domain
          Length = 596

 Score = 27.5 bits (58), Expect = 4.0
 Identities = 12/30 (40%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
 Frame = -3

Query: 356 SFYIFFG-YYGCKIHQFI*I*FFGTTLDCV 270
           +FY+FF  + G KIHQ+I +  +   + CV
Sbjct: 27  AFYVFFAPFVGKKIHQYIAMGIYTPLITCV 56


>At5g05730.1 68418.m00630 anthranilate synthase, alpha subunit,
           component I-1 (ASA1) identical to SP|P32068
          Length = 595

 Score = 26.6 bits (56), Expect = 7.0
 Identities = 10/32 (31%), Positives = 17/32 (53%)
 Frame = -1

Query: 118 FERSQVLAFVVEWIDENKELEWESTFSTSRQH 23
           F+  +  A+V+ WI  +  L +E  +S   QH
Sbjct: 236 FDHVEKKAYVIHWIRLDGSLPYEKAYSNGMQH 267


>At1g36970.1 68414.m04608 hypothetical protein
          Length = 439

 Score = 26.6 bits (56), Expect = 7.0
 Identities = 13/46 (28%), Positives = 26/46 (56%)
 Frame = +2

Query: 152 PLDRPVVDALFKVPNMYFKDIFIYHEGERFPYKFIFLRMTHSLMLF 289
           P    V D   K  ++   ++F+  +G  + +KF+ + +TH+LML+
Sbjct: 346 PQPPAVYDTATKPSSIDVSEVFL-PKGFYYYFKFLIMDVTHTLMLY 390


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,646,538
Number of Sequences: 28952
Number of extensions: 180118
Number of successful extensions: 444
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 440
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 444
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 665183504
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)