Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10823X
         (370 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292375-1|CAL23187.2|  311|Tribolium castaneum gustatory recept...    22   2.3  
AM295014-1|CAL25729.1|  407|Tribolium castaneum ultraspiracle nu...    20   7.0  
AF263514-1|AAF74206.1|  127|Tribolium castaneum cytochrome P450 ...    20   9.2  

>AM292375-1|CAL23187.2|  311|Tribolium castaneum gustatory receptor
           candidate 54 protein.
          Length = 311

 Score = 21.8 bits (44), Expect = 2.3
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = -3

Query: 110 QVISQQLHY*RRSFVRIFVQCVQFGDGIVESLFG 9
           Q I ++L+  R S  R+F + V F  G + +LFG
Sbjct: 54  QFIDKKLNN-RNSKSRVFYENVNFQFGSILALFG 86


>AM295014-1|CAL25729.1|  407|Tribolium castaneum ultraspiracle
          nuclear receptor protein.
          Length = 407

 Score = 20.2 bits (40), Expect = 7.0
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = +1

Query: 4  NSPNRLSTMPSP 39
          N+PN+ ST P P
Sbjct: 63 NTPNKSSTSPYP 74


>AF263514-1|AAF74206.1|  127|Tribolium castaneum cytochrome P450
           monooxygenase protein.
          Length = 127

 Score = 19.8 bits (39), Expect = 9.2
 Identities = 6/13 (46%), Positives = 9/13 (69%)
 Frame = -3

Query: 278 VFGDDTAPTTFSN 240
           +FGD   P TF++
Sbjct: 29  IFGDSDRPATFAD 41


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 71,463
Number of Sequences: 336
Number of extensions: 1149
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 122,585
effective HSP length: 50
effective length of database: 105,785
effective search space used:  7616520
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)