Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV10823X
(370 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC8E11.02c |rad24||14-3-3 protein Rad24|Schizosaccharomyces po... 77 1e-15
SPAC17A2.13c |rad25||14-3-3 protein Rad25|Schizosaccharomyces po... 75 4e-15
SPBC16E9.16c |||sequence orphan|Schizosaccharomyces pombe|chr 2|... 27 0.93
SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces p... 25 4.9
SPBC19C7.08c |||leucine carboxyl methyltransferase|Schizosacchar... 25 4.9
SPBC1711.16 |||WD repeat protein Pwp1 |Schizosaccharomyces pombe... 25 4.9
SPAC24H6.09 |gef1||RhoGEF Gef1|Schizosaccharomyces pombe|chr 1||... 25 4.9
SPCC584.03c |||RanGTP-binding protein |Schizosaccharomyces pombe... 24 6.5
SPAC19B12.03 |bgs3||1,3-beta-glucan synthase subunit Bgs3|Schizo... 24 6.5
SPAC3H5.06c |pol1|swi7, polA|DNA polymerase alpha catalytic subu... 24 8.6
SPAC1556.06.1 |meu1|SPAC1556.06a, SPAC1556.06|sequence orphan|Sc... 24 8.6
>SPAC8E11.02c |rad24||14-3-3 protein Rad24|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 270
Score = 76.6 bits (180), Expect = 1e-15
Identities = 35/43 (81%), Positives = 41/43 (95%)
Frame = +3
Query: 6 LAKQAFDDAIAELDTLNEDSYKASTLIMQLLRDNLTLWTSDTQ 134
LAKQAFD+AI+ELD+L+E+SYK STLIMQLLRDNLTLWTSD +
Sbjct: 196 LAKQAFDEAISELDSLSEESYKDSTLIMQLLRDNLTLWTSDAE 238
>SPAC17A2.13c |rad25||14-3-3 protein Rad25|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 270
Score = 74.9 bits (176), Expect = 4e-15
Identities = 34/43 (79%), Positives = 40/43 (93%)
Frame = +3
Query: 6 LAKQAFDDAIAELDTLNEDSYKASTLIMQLLRDNLTLWTSDTQ 134
LAKQ FD+AI+ELD+L+E+SYK STLIMQLLRDNLTLWTSD +
Sbjct: 195 LAKQVFDEAISELDSLSEESYKDSTLIMQLLRDNLTLWTSDAE 237
>SPBC16E9.16c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 642
Score = 27.1 bits (57), Expect = 0.93
Identities = 19/57 (33%), Positives = 27/57 (47%), Gaps = 3/57 (5%)
Frame = +1
Query: 136 AMATSLPRAATT---NISPHSPQHTHFLSSVFIRKRVAFENVVGAVSSPKTTRAVAS 297
A+ T+ P +T + + H P T +SS R V GA +P TT+AV S
Sbjct: 503 AVTTNEPTDVSTKSKSAAYHYPATTETVSSKAARSATTPAYVGGATKTPSTTKAVES 559
>SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 517
Score = 24.6 bits (51), Expect = 4.9
Identities = 6/19 (31%), Positives = 13/19 (68%)
Frame = -2
Query: 60 LRSMCPVRRWHRRKPVWRV 4
LR + P+ +W R++ +W +
Sbjct: 119 LRDVTPINQWKRKRSLWDI 137
>SPBC19C7.08c |||leucine carboxyl
methyltransferase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 681
Score = 24.6 bits (51), Expect = 4.9
Identities = 20/61 (32%), Positives = 28/61 (45%), Gaps = 3/61 (4%)
Frame = -3
Query: 368 VKDDTTFNIRR---NGKVRCERLLTFLEATARVVFGDDTAPTTFSNATRFLINTDERKCV 198
++DD F I N V+ E LL+ + + V FGDD+ P A F E + V
Sbjct: 560 LRDDDHFEIVTRVLNFDVQVEILLSRIGSKV-VFFGDDSKPIIVGGAAVFRTILWEEESV 618
Query: 197 C 195
C
Sbjct: 619 C 619
>SPBC1711.16 |||WD repeat protein Pwp1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 516
Score = 24.6 bits (51), Expect = 4.9
Identities = 12/25 (48%), Positives = 17/25 (68%)
Frame = +3
Query: 3 QLAKQAFDDAIAELDTLNEDSYKAS 77
QL+K +DA A+L + EDS KA+
Sbjct: 34 QLSKLKLEDARADLQSSMEDSNKAN 58
>SPAC24H6.09 |gef1||RhoGEF Gef1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 753
Score = 24.6 bits (51), Expect = 4.9
Identities = 12/32 (37%), Positives = 16/32 (50%)
Frame = +1
Query: 118 GRQTLKAMATSLPRAATTNISPHSPQHTHFLS 213
GR++ + A +L T N P S QH F S
Sbjct: 81 GRRSRASFARALQDPQTPNTPPVSSQHRRFFS 112
>SPCC584.03c |||RanGTP-binding protein |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 551
Score = 24.2 bits (50), Expect = 6.5
Identities = 13/39 (33%), Positives = 20/39 (51%)
Frame = +3
Query: 63 SYKASTLIMQLLRDNLTLWTSDTQGDGDEPAEGGDN*YL 179
S ST QLLR N ++ ++ G+EP + G +L
Sbjct: 160 SLPKSTSFSQLLRANSYIYRANVAFTGNEPLQVGPTFFL 198
>SPAC19B12.03 |bgs3||1,3-beta-glucan synthase subunit
Bgs3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1826
Score = 24.2 bits (50), Expect = 6.5
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = +3
Query: 66 YKASTLIMQLLRDNLTLWTS 125
Y S LIM LL +T+WT+
Sbjct: 1421 YLGSRLIMMLLFGTMTVWTT 1440
>SPAC3H5.06c |pol1|swi7, polA|DNA polymerase alpha catalytic subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1405
Score = 23.8 bits (49), Expect = 8.6
Identities = 13/40 (32%), Positives = 21/40 (52%)
Frame = +1
Query: 244 ENVVGAVSSPKTTRAVASKNVKSRSQRTFPFRLILNVVSS 363
+++ +S+ K R+ + N K RSQ+ NVVSS
Sbjct: 150 QDIPERLSTKKGNRSHTTSNAKRRSQKAASSISTTNVVSS 189
>SPAC1556.06.1 |meu1|SPAC1556.06a, SPAC1556.06|sequence
orphan|Schizosaccharomyces pombe|chr 1|||Manual
Length = 776
Score = 23.8 bits (49), Expect = 8.6
Identities = 9/24 (37%), Positives = 13/24 (54%)
Frame = +3
Query: 9 AKQAFDDAIAELDTLNEDSYKAST 80
A QA DD ++T+ D YK +
Sbjct: 246 AMQAIDDISGTIETIKSDCYKVES 269
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,309,088
Number of Sequences: 5004
Number of extensions: 21733
Number of successful extensions: 78
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 76
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 78
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 116121426
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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