Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10823X
         (370 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_34219| Best HMM Match : No HMM Matches (HMM E-Value=.)              83   9e-17
SB_36368| Best HMM Match : 14-3-3 (HMM E-Value=0)                      74   3e-14
SB_23213| Best HMM Match : SH3_1 (HMM E-Value=9.2e-12)                 30   0.67 
SB_19007| Best HMM Match : rve (HMM E-Value=2e-12)                     27   3.6  
SB_53413| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   4.8  
SB_40686| Best HMM Match : rve (HMM E-Value=0.00016)                   27   6.3  
SB_20481| Best HMM Match : Pox_A_type_inc (HMM E-Value=5.60519e-45)    27   6.3  
SB_57634| Best HMM Match : EGF_2 (HMM E-Value=0.0014)                  26   8.3  
SB_38321| Best HMM Match : ZZ (HMM E-Value=8.1e-09)                    26   8.3  
SB_6365| Best HMM Match : No HMM Matches (HMM E-Value=.)               26   8.3  
SB_1631| Best HMM Match : No HMM Matches (HMM E-Value=.)               26   8.3  
SB_24987| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   8.3  
SB_10201| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   8.3  

>SB_34219| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 309

 Score = 82.6 bits (195), Expect = 9e-17
 Identities = 40/50 (80%), Positives = 45/50 (90%), Gaps = 1/50 (2%)
 Frame = +3

Query: 3   QLAKQAFDDAIAELDTLNEDSYKASTLIMQLLRDNLTLWTSDTQGD-GDE 149
           +LAKQAFDDAIAELD+LNED YK STLIMQLLRDNLTLW+S+ Q D GD+
Sbjct: 260 KLAKQAFDDAIAELDSLNEDQYKDSTLIMQLLRDNLTLWSSENQEDQGDD 309



 Score = 70.5 bits (165), Expect = 4e-13
 Identities = 38/56 (67%), Positives = 42/56 (75%), Gaps = 2/56 (3%)
 Frame = +3

Query: 6   LAKQAFDDAIAELDTLNEDSYKASTLIMQLLRDNLTLWTSDTQG--DGDEPAEGGD 167
           LAK+AFDDAIAELDTL+ED YK STLIMQLLRDNLT+     Q   +  E AE GD
Sbjct: 172 LAKKAFDDAIAELDTLSEDQYKDSTLIMQLLRDNLTVVEKALQAYKEAKEAAETGD 227


>SB_36368| Best HMM Match : 14-3-3 (HMM E-Value=0)
          Length = 248

 Score = 74.1 bits (174), Expect = 3e-14
 Identities = 34/49 (69%), Positives = 41/49 (83%)
 Frame = +3

Query: 3   QLAKQAFDDAIAELDTLNEDSYKASTLIMQLLRDNLTLWTSDTQGDGDE 149
           +LAK+AFDDAIA LD L ++SYK STLIMQLLRDNLTLWTS+   +G +
Sbjct: 198 KLAKEAFDDAIAVLDNLKDESYKDSTLIMQLLRDNLTLWTSEQDQEGQD 246


>SB_23213| Best HMM Match : SH3_1 (HMM E-Value=9.2e-12)
          Length = 979

 Score = 29.9 bits (64), Expect = 0.67
 Identities = 18/49 (36%), Positives = 24/49 (48%), Gaps = 3/49 (6%)
 Frame = +3

Query: 24  DDAIAELDTLNEDSYKASTLIMQL---LRDNLTLWTSDTQGDGDEPAEG 161
           DD   + D  ++DS    +   QL   L+  + LW S TQGD D  A G
Sbjct: 850 DDDDFDTDEWSDDSDAEGSAAGQLKLCLKREILLWKSGTQGDADRRATG 898


>SB_19007| Best HMM Match : rve (HMM E-Value=2e-12)
          Length = 539

 Score = 27.5 bits (58), Expect = 3.6
 Identities = 18/72 (25%), Positives = 30/72 (41%)
 Frame = +1

Query: 115 FGRQTLKAMATSLPRAATTNISPHSPQHTHFLSSVFIRKRVAFENVVGAVSSPKTTRAVA 294
           FGR   K    +LP    +   P S     F   V+I+     + +  A+ +   TRA+ 
Sbjct: 211 FGRPYDKPPIAALPEFRVSEAPPFSKTGVDFAGPVYIKGHEGMKKMYIALFTCSVTRALH 270

Query: 295 SKNVKSRSQRTF 330
            +  +  S R+F
Sbjct: 271 LELTEDLSTRSF 282


>SB_53413| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 304

 Score = 27.1 bits (57), Expect = 4.8
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = +3

Query: 48  TLNEDSYKASTLIMQLLRDNLTLWTSDTQGDGDE 149
           TL+E + K  TLI  + RD++    S   GDG E
Sbjct: 202 TLSETADKIETLISLIKRDSVIAIASGDPGDGPE 235


>SB_40686| Best HMM Match : rve (HMM E-Value=0.00016)
          Length = 1586

 Score = 26.6 bits (56), Expect = 6.3
 Identities = 11/23 (47%), Positives = 17/23 (73%)
 Frame = +2

Query: 269  HRRRREPSLLKMLKVVRSGPSRS 337
            +++RR+ S +  LKV R GPS+S
Sbjct: 1223 YQQRRQKSSIGKLKVAREGPSQS 1245


>SB_20481| Best HMM Match : Pox_A_type_inc (HMM E-Value=5.60519e-45)
          Length = 4160

 Score = 26.6 bits (56), Expect = 6.3
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = +3

Query: 12  KQAFDDAIAELDTLNEDSYKASTLIMQLLRDNLTL 116
           +Q  DD   ++D L +D      L+ QL R+N TL
Sbjct: 893 EQDIDDKYRQIDRLTKDLNSKINLVDQLKRENHTL 927


>SB_57634| Best HMM Match : EGF_2 (HMM E-Value=0.0014)
          Length = 198

 Score = 26.2 bits (55), Expect = 8.3
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = +3

Query: 105 NLTLWTSDTQGDGDEPAEGGDN 170
           NL+L+T+D  G+   P E GDN
Sbjct: 39  NLSLFTNDASGNLQPPREIGDN 60


>SB_38321| Best HMM Match : ZZ (HMM E-Value=8.1e-09)
          Length = 584

 Score = 26.2 bits (55), Expect = 8.3
 Identities = 14/32 (43%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
 Frame = -3

Query: 290 TARVVFGDDTAPTTFS-NATRFLINTDERKCV 198
           TAR VF  DTAPT F  +  R +   D  + V
Sbjct: 452 TARTVFKVDTAPTVFKVDTARTVFEVDTARTV 483


>SB_6365| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1017

 Score = 26.2 bits (55), Expect = 8.3
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = +3

Query: 105 NLTLWTSDTQGDGDEPAEGGDN 170
           NL+L+T+D  G+   P E GDN
Sbjct: 357 NLSLFTNDASGNLQPPREIGDN 378


>SB_1631| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 884

 Score = 26.2 bits (55), Expect = 8.3
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = +3

Query: 105 NLTLWTSDTQGDGDEPAEGGDN 170
           NL+L+T D+ G    PAE G+N
Sbjct: 701 NLSLFTKDSSGQLQPPAEIGEN 722


>SB_24987| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 684

 Score = 26.2 bits (55), Expect = 8.3
 Identities = 14/38 (36%), Positives = 19/38 (50%)
 Frame = +1

Query: 163 ATTNISPHSPQHTHFLSSVFIRKRVAFENVVGAVSSPK 276
           AT N    +P   H L  +F+R+  A   V+G   SPK
Sbjct: 626 ATQNCYVQNPVSFHRLMLMFLREYAANITVIGEAFSPK 663


>SB_10201| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1162

 Score = 26.2 bits (55), Expect = 8.3
 Identities = 12/37 (32%), Positives = 21/37 (56%), Gaps = 2/37 (5%)
 Frame = +3

Query: 24  DDAIAELDTL--NEDSYKASTLIMQLLRDNLTLWTSD 128
           DD+   L ++  N +++KA  L   +  +NL LW S+
Sbjct: 149 DDSFYYLKSISGNRENFKAHVLTEDITEENLELWISE 185


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,270,770
Number of Sequences: 59808
Number of extensions: 183809
Number of successful extensions: 648
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 597
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 643
length of database: 16,821,457
effective HSP length: 74
effective length of database: 12,395,665
effective search space used: 594991920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)