Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10822
         (486 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1393.07c |mug4||sequence orphan|Schizosaccharomyces pombe|ch...    28   0.65 
SPAC607.08c |||DUF726 family protein|Schizosaccharomyces pombe|c...    25   4.6  
SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces ...    25   4.6  
SPAC6G9.05 |pcd1||coenzyme A diphosphatase |Schizosaccharomyces ...    25   6.1  
SPBC19F5.03 |||inositol polyphosphate phosphatase |Schizosacchar...    25   6.1  
SPBC18E5.03c |sim4||kinetochore protein Sim4 |Schizosaccharomyce...    25   8.0  
SPBC1198.07c |||mannan endo-1,6-alpha-mannosidase |Schizosacchar...    25   8.0  

>SPCC1393.07c |mug4||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 845

 Score = 28.3 bits (60), Expect = 0.65
 Identities = 14/27 (51%), Positives = 16/27 (59%)
 Frame = -2

Query: 176 ILQHRRPRLPLMQLEAPCSFNFCSLRA 96
           I Q     LP + L +PCSF  CSLRA
Sbjct: 48  IAQKSNISLPFLTL-SPCSFTICSLRA 73


>SPAC607.08c |||DUF726 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 579

 Score = 25.4 bits (53), Expect = 4.6
 Identities = 12/24 (50%), Positives = 14/24 (58%)
 Frame = +2

Query: 182 TGGLLTPLVAPVLGFSSAGIAAGS 253
           TGGL  P VA  LG   AG+  G+
Sbjct: 189 TGGLAAPFVAAGLGTLFAGLGLGT 212


>SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 620

 Score = 25.4 bits (53), Expect = 4.6
 Identities = 20/54 (37%), Positives = 23/54 (42%), Gaps = 2/54 (3%)
 Frame = +1

Query: 190 SVDSISGSRARFQLSGNSGR--KQAAAAQAYYGNLVAGSIVSQLTAAAMVAPTP 345
           SVDS +         GN G    QAAA  +      A SI+  L A A  AP P
Sbjct: 158 SVDSAAAPSQSTNPEGNGGSVGSQAAAPTSRPVENDAASILEALAAFAQKAPVP 211


>SPAC6G9.05 |pcd1||coenzyme A diphosphatase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 285

 Score = 25.0 bits (52), Expect = 6.1
 Identities = 11/29 (37%), Positives = 14/29 (48%)
 Frame = -2

Query: 203 MESTDPQCHILQHRRPRLPLMQLEAPCSF 117
           M+S   Q ++L   RP LPL     P  F
Sbjct: 88  MDSLSHQIYLLHKNRPTLPLKPTNQPTRF 116


>SPBC19F5.03 |||inositol polyphosphate phosphatase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 598

 Score = 25.0 bits (52), Expect = 6.1
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = +3

Query: 360 TSPVLDIAPGSDLFCFIWN*NA 425
           T P+  + P  ++FC IW+ NA
Sbjct: 411 THPLRSVIPLDNIFCNIWSDNA 432


>SPBC18E5.03c |sim4||kinetochore protein Sim4 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 277

 Score = 24.6 bits (51), Expect = 8.0
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = -3

Query: 460 LHRIDKFIKNLNAF*FQIKQKRSDPGAMSRTG 365
           LH+I KF  +L +    + +++    AMSR G
Sbjct: 119 LHQIKKFSSDLQSLKSSMGERQKQQAAMSRRG 150


>SPBC1198.07c |||mannan endo-1,6-alpha-mannosidase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 507

 Score = 24.6 bits (51), Expect = 8.0
 Identities = 9/28 (32%), Positives = 13/28 (46%)
 Frame = +1

Query: 109 QKLKEHGASSCISGKRGRRCCNIWHWGS 192
           Q   E  A +C  G  G  C  +W+W +
Sbjct: 394 QSSAEAAALACSGGSDGVTCGYMWYWNN 421


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,760,541
Number of Sequences: 5004
Number of extensions: 31863
Number of successful extensions: 74
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 74
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 74
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 188065158
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)