Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10817
         (766 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP4H10.04 |ppb1||calcineurin catalytic subunit Ppb1|Schizosacc...    29   0.73 
SPAC23G3.06 |||U3 snoRNP protein Nop58 |Schizosaccharomyces pomb...    27   2.9  
SPCC1442.16c |zta1|SPCC285.01c|NADPH quinone oxidoreductase/ARE-...    26   6.8  

>SPBP4H10.04 |ppb1||calcineurin catalytic subunit
           Ppb1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 554

 Score = 29.1 bits (62), Expect = 0.73
 Identities = 13/36 (36%), Positives = 20/36 (55%)
 Frame = -1

Query: 580 YTSDRFG*RYSKLHNYNFQVYEV*NMRFNAVPSSAL 473
           + +D F  +    H YN +VYE     FNA+P +A+
Sbjct: 184 HLTDYFTFKLECTHKYNIKVYEACLQSFNALPLAAI 219


>SPAC23G3.06 |||U3 snoRNP protein Nop58 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 508

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 13/41 (31%), Positives = 22/41 (53%)
 Frame = +3

Query: 366 KKKRHHRTKNVSKEDKAEAKIKRVFKKHPLNVQVSVKAEDG 488
           KKK+  + K    E   + K ++  KKH  + + S ++EDG
Sbjct: 454 KKKKSSKLKEADGESSKKEKKEKKDKKHKKSKRKSEESEDG 494


>SPCC1442.16c |zta1|SPCC285.01c|NADPH quinone
           oxidoreductase/ARE-binding protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 329

 Score = 25.8 bits (54), Expect = 6.8
 Identities = 10/38 (26%), Positives = 19/38 (50%)
 Frame = +2

Query: 533 IVVKFTVSLPKPVTGVSAADVLNGHSILNELYPGDTGD 646
           +V K +  +P  +   +    L  ++++ E YP  TGD
Sbjct: 105 LVSKVSEKIPLKIASAALLQGLTAYTLIEEAYPVKTGD 142


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,707,477
Number of Sequences: 5004
Number of extensions: 50196
Number of successful extensions: 135
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 129
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 135
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 367316502
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)