Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV10817
(766 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_0863 + 32313890-32314132,32314227-32314517,32315157-323154... 38 0.009
06_01_1027 + 8011609-8011814,8011893-8012063,8012145-8012286 26 3.1
03_02_0367 + 7834072-7834479,7834555-7834779,7834858-7835082,783... 27 4.6
11_05_0074 + 18850567-18851095,18851249-18851274,18851353-188516... 26 6.0
08_02_0621 - 19397038-19397076,19397305-19397593,19397676-193978... 28 7.1
12_02_0221 - 15855479-15855517,15855745-15856033,15856118-158562... 28 9.4
07_03_0677 + 20620873-20621401,20621555-20621580,20621659-206221... 28 9.4
06_03_0098 - 16621473-16621511,16621617-16621655,16621741-166220... 28 9.4
03_05_0492 - 24874517-24874960,24875672-24875815,24876214-248762... 28 9.4
>02_05_0863 +
32313890-32314132,32314227-32314517,32315157-32315493,
32315944-32316278,32316763-32317010,32317296-32317881,
32317970-32318083,32318165-32318287,32318325-32318531
Length = 827
Score = 37.9 bits (84), Expect = 0.009
Identities = 27/81 (33%), Positives = 37/81 (45%), Gaps = 1/81 (1%)
Frame = +2
Query: 527 KIIVVKFTVSLPKPVTGVSAADVLN-GHSILNELYPGDTGDDSPHPATSYLLKNAGISES 703
K++V++F V V D H IL L+P DTG + PH AG +
Sbjct: 357 KLMVLRFDYLAKLNVVCVGIEDSKGLDHDILCNLFPDDTGLELPHQMAKLY---AGEVPN 413
Query: 704 FSHFIPEIGRPYVWAQRMCGL 766
FS + RPY WAQ + G+
Sbjct: 414 FSE---KDSRPYKWAQHLAGI 431
>06_01_1027 + 8011609-8011814,8011893-8012063,8012145-8012286
Length = 172
Score = 25.8 bits (54), Expect(2) = 3.1
Identities = 8/26 (30%), Positives = 12/26 (46%)
Frame = +1
Query: 685 CRYIGKLFSFHTRNWTPIRLGTKNVW 762
C Y+ + +WTPI+L W
Sbjct: 141 CHYLNSRIDKNAYDWTPIQLAIDEAW 166
Score = 22.2 bits (45), Expect(2) = 3.1
Identities = 7/21 (33%), Positives = 10/21 (47%)
Frame = +1
Query: 544 VYCIATQTCHWCICC*CSKWT 606
+ C Q HW + SKW+
Sbjct: 119 IMCAYNQYAHWILLVITSKWS 139
>03_02_0367 +
7834072-7834479,7834555-7834779,7834858-7835082,
7835333-7836219,7836298-7836468,7836551-7836839,
7836925-7836963,7837069-7837107
Length = 760
Score = 26.6 bits (56), Expect(2) = 4.6
Identities = 9/26 (34%), Positives = 13/26 (50%)
Frame = +1
Query: 685 CRYIGKLFSFHTRNWTPIRLGTKNVW 762
C Y+ +T +WTPI+L W
Sbjct: 654 CHYLNSRIDKNTYDWTPIQLVIDEAW 679
Score = 20.6 bits (41), Expect(2) = 4.6
Identities = 6/21 (28%), Positives = 9/21 (42%)
Frame = +1
Query: 544 VYCIATQTCHWCICC*CSKWT 606
+ C Q HW + KW+
Sbjct: 632 IMCAYNQYAHWILLIIAPKWS 652
>11_05_0074 +
18850567-18851095,18851249-18851274,18851353-18851645,
18851898-18852699,18852874-18853022,18853105-18853393,
18853479-18853517,18853623-18853661
Length = 721
Score = 25.8 bits (54), Expect(2) = 6.0
Identities = 8/26 (30%), Positives = 12/26 (46%)
Frame = +1
Query: 685 CRYIGKLFSFHTRNWTPIRLGTKNVW 762
C Y+ + +WTPI+L W
Sbjct: 615 CHYLNSRIDKNAYDWTPIQLAIDEAW 640
Score = 21.0 bits (42), Expect(2) = 6.0
Identities = 7/21 (33%), Positives = 9/21 (42%)
Frame = +1
Query: 544 VYCIATQTCHWCICC*CSKWT 606
+ C Q HW I KW+
Sbjct: 593 IMCAYNQYAHWIILVITPKWS 613
>08_02_0621 -
19397038-19397076,19397305-19397593,19397676-19397824,
19399030-19399839,19399926-19400105,19400450-19400674,
19400750-19401157
Length = 699
Score = 28.3 bits (60), Expect = 7.1
Identities = 9/26 (34%), Positives = 13/26 (50%)
Frame = +1
Query: 685 CRYIGKLFSFHTRNWTPIRLGTKNVW 762
C Y+ + +WTPI+LG W
Sbjct: 606 CHYLNSRIDKNAYDWTPIQLGIDEAW 631
>12_02_0221 -
15855479-15855517,15855745-15856033,15856118-15856288,
15856367-15856572
Length = 234
Score = 27.9 bits (59), Expect = 9.4
Identities = 9/26 (34%), Positives = 12/26 (46%)
Frame = +1
Query: 685 CRYIGKLFSFHTRNWTPIRLGTKNVW 762
C Y+ + NWTPI+L W
Sbjct: 141 CHYLNSRIDKNAYNWTPIQLAIDEAW 166
>07_03_0677 +
20620873-20621401,20621555-20621580,20621659-20622105,
20622193-20623079,20623158-20623328,20623411-20623603,
20623785-20623823,20623929-20623967
Length = 776
Score = 27.9 bits (59), Expect = 9.4
Identities = 9/26 (34%), Positives = 12/26 (46%)
Frame = +1
Query: 685 CRYIGKLFSFHTRNWTPIRLGTKNVW 762
C Y+ + NWTPI+L W
Sbjct: 702 CHYLNSRIDKNAYNWTPIQLAIDEAW 727
>06_03_0098 -
16621473-16621511,16621617-16621655,16621741-16622029,
16622112-16622282,16622361-16623244,16623332-16623775,
16623854-16624561
Length = 857
Score = 27.9 bits (59), Expect = 9.4
Identities = 9/26 (34%), Positives = 13/26 (50%)
Frame = +1
Query: 685 CRYIGKLFSFHTRNWTPIRLGTKNVW 762
C Y+ +T +WTPI+L W
Sbjct: 751 CHYLNSRIDKNTYDWTPIQLAIDEAW 776
>03_05_0492 -
24874517-24874960,24875672-24875815,24876214-24876282,
24876452-24876570,24878292-24878580
Length = 354
Score = 27.9 bits (59), Expect = 9.4
Identities = 21/70 (30%), Positives = 31/70 (44%), Gaps = 1/70 (1%)
Frame = +2
Query: 554 SLPKPVTGVSAADVLNGHSILNELYPGDTGD-DSPHPATSYLLKNAGISESFSHFIPEIG 730
++PK G A +VL L PGDTG+ + H AT + + + E HF +G
Sbjct: 76 AMPKRGGGGGAPEVLKFSVFSGNLEPGDTGEKNREHSAT--IAMQSPLPEYNGHFELGLG 133
Query: 731 RPYVWAQRMC 760
+ V C
Sbjct: 134 QSMVSPNYPC 143
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,943,161
Number of Sequences: 37544
Number of extensions: 310419
Number of successful extensions: 810
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 778
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 807
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2051430072
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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