Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10817
         (766 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_31746| Best HMM Match : HR1 (HMM E-Value=2.1)                       61   8e-10
SB_17497| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.3  
SB_32738| Best HMM Match : 7tm_1 (HMM E-Value=2.6e-13)                 28   7.2  

>SB_31746| Best HMM Match : HR1 (HMM E-Value=2.1)
          Length = 398

 Score = 61.3 bits (142), Expect = 8e-10
 Identities = 33/79 (41%), Positives = 47/79 (59%), Gaps = 4/79 (5%)
 Frame = +2

Query: 542 KFTVSLPKPVTGVSAAD----VLNGHSILNELYPGDTGDDSPHPATSYLLKNAGISESFS 709
           K +++   P T  S A     +L   SIL  L+PGD G+ SP+    + L   GI +SFS
Sbjct: 187 KKSITQDPPPTDCSEAQLQSTILAPESILTCLFPGDHGNTSPNATNQFQLTKDGI-DSFS 245

Query: 710 HFIPEIGRPYVWAQRMCGL 766
            F+ E G+P++WAQR+CGL
Sbjct: 246 AFVGETGQPFLWAQRICGL 264



 Score = 33.5 bits (73), Expect = 0.19
 Identities = 18/50 (36%), Positives = 25/50 (50%)
 Frame = +1

Query: 70  PHLKDVLKSTKPLQECLALRLDEKRDEXXXXXXXXXXXXXXXKNANAYSD 219
           P L+++LKST P+QE L L LD KR +                 A AY++
Sbjct: 94  PRLEEILKSTVPVQEYLNLPLDAKRAQHETARYLSQPLYVLYVQATAYNE 143


>SB_17497| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 62

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 13/41 (31%), Positives = 21/41 (51%)
 Frame = +2

Query: 560 PKPVTGVSAADVLNGHSILNELYPGDTGDDSPHPATSYLLK 682
           P P +  +   +   HS +N+ YP D GDD  + A   +L+
Sbjct: 3   PWPASKTTQTPLKAVHSDMNDHYPNDYGDDDDYKAHDIMLR 43


>SB_32738| Best HMM Match : 7tm_1 (HMM E-Value=2.6e-13)
          Length = 323

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = +3

Query: 423 KIKRVFKKHPLNVQVSVKAEDGTALNLI 506
           KI +V K H L +  SV +E+G  +NL+
Sbjct: 208 KIYKVLKYHHLKINQSVPSEEGKVVNLL 235


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,071,602
Number of Sequences: 59808
Number of extensions: 370335
Number of successful extensions: 860
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 807
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 859
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2072022557
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)