Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10817
         (766 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY061305-1|AAL28853.1|  616|Drosophila melanogaster LD21694p pro...    43   5e-04
AJ620304-1|CAF04333.1|  616|Drosophila melanogaster THO complex ...    43   5e-04
AE013599-3748|AAF47114.2|  616|Drosophila melanogaster CG2980-PA...    43   5e-04

>AY061305-1|AAL28853.1|  616|Drosophila melanogaster LD21694p
           protein.
          Length = 616

 Score = 42.7 bits (96), Expect = 5e-04
 Identities = 18/57 (31%), Positives = 32/57 (56%), Gaps = 3/57 (5%)
 Frame = +2

Query: 605 HSILNELYPGDTGDDSPHPATSYLLKNAGIS-ESFSHFIP--EIGRPYVWAQRMCGL 766
           H +L  LYP D G++ P P   Y L+++ ++ E    ++   + G+P+ W Q MC +
Sbjct: 334 HHLLRHLYPNDLGNELPIPGIQYELRSSDLTAEECVRYLKAKDYGKPFCWLQSMCSI 390


>AJ620304-1|CAF04333.1|  616|Drosophila melanogaster THO complex 5
           protein.
          Length = 616

 Score = 42.7 bits (96), Expect = 5e-04
 Identities = 18/57 (31%), Positives = 32/57 (56%), Gaps = 3/57 (5%)
 Frame = +2

Query: 605 HSILNELYPGDTGDDSPHPATSYLLKNAGIS-ESFSHFIP--EIGRPYVWAQRMCGL 766
           H +L  LYP D G++ P P   Y L+++ ++ E    ++   + G+P+ W Q MC +
Sbjct: 334 HHLLRHLYPNDLGNELPIPGIQYELRSSDLTAEECVRYLKAKDYGKPFCWLQSMCSI 390


>AE013599-3748|AAF47114.2|  616|Drosophila melanogaster CG2980-PA
           protein.
          Length = 616

 Score = 42.7 bits (96), Expect = 5e-04
 Identities = 18/57 (31%), Positives = 32/57 (56%), Gaps = 3/57 (5%)
 Frame = +2

Query: 605 HSILNELYPGDTGDDSPHPATSYLLKNAGIS-ESFSHFIP--EIGRPYVWAQRMCGL 766
           H +L  LYP D G++ P P   Y L+++ ++ E    ++   + G+P+ W Q MC +
Sbjct: 334 HHLLRHLYPNDLGNELPIPGIQYELRSSDLTAEECVRYLKAKDYGKPFCWLQSMCSI 390


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 28,951,884
Number of Sequences: 53049
Number of extensions: 551481
Number of successful extensions: 1540
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1498
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1539
length of database: 24,988,368
effective HSP length: 83
effective length of database: 20,585,301
effective search space used: 3520086471
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)