Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10817
         (766 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive o...    23   2.4  
AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin ...    23   2.4  
Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein RJP...    22   7.2  
AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    22   7.2  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    22   7.2  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    21   9.5  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    21   9.5  

>U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive
           opsin protein.
          Length = 377

 Score = 23.4 bits (48), Expect = 2.4
 Identities = 7/25 (28%), Positives = 13/25 (52%)
 Frame = -1

Query: 157 PWPHHVFHPSVEQDILAKV*WISRH 83
           PW + + HP   Q++  +  W+  H
Sbjct: 333 PWIYAINHPRYRQELQKRCKWMGIH 357


>AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin
           protein.
          Length = 377

 Score = 23.4 bits (48), Expect = 2.4
 Identities = 7/25 (28%), Positives = 13/25 (52%)
 Frame = -1

Query: 157 PWPHHVFHPSVEQDILAKV*WISRH 83
           PW + + HP   Q++  +  W+  H
Sbjct: 333 PWIYAINHPRYRQELQKRCKWMGIH 357


>Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein
           RJP57-1 protein.
          Length = 544

 Score = 21.8 bits (44), Expect = 7.2
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = -3

Query: 698 PIYLHFLVNKKLQGGVNHLPYP 633
           P  L+ + NKK +GG    PYP
Sbjct: 93  PSSLNVVTNKKGKGGPLLRPYP 114


>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 21.8 bits (44), Expect = 7.2
 Identities = 6/13 (46%), Positives = 10/13 (76%)
 Frame = -2

Query: 297 QHCFDHAGELHLH 259
           +  F+H+G+LH H
Sbjct: 154 ERAFEHSGKLHRH 166


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 21.8 bits (44), Expect = 7.2
 Identities = 11/35 (31%), Positives = 18/35 (51%)
 Frame = +3

Query: 393 NVSKEDKAEAKIKRVFKKHPLNVQVSVKAEDGTAL 497
           ++S E+      K   +K P +   SVKAE G+ +
Sbjct: 868 SISHENNQPTMNKCSDRKRPASQATSVKAEPGSIM 902


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 6/15 (40%), Positives = 13/15 (86%)
 Frame = +2

Query: 116 VLLYAWMKNVMRPGP 160
           +LLY++++  ++PGP
Sbjct: 423 MLLYSFIEQTLQPGP 437


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 6/15 (40%), Positives = 13/15 (86%)
 Frame = +2

Query: 116 VLLYAWMKNVMRPGP 160
           +LLY++++  ++PGP
Sbjct: 423 MLLYSFIEQTLQPGP 437


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 183,239
Number of Sequences: 438
Number of extensions: 3753
Number of successful extensions: 9
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 23911269
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)