Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10816X
         (349 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A7FIR2 Cluster: Gram-negative pili assembly chaperone; ...    31   4.1  
UniRef50_A7SJT0 Cluster: Predicted protein; n=1; Nematostella ve...    31   7.2  
UniRef50_Q2SPQ3 Cluster: Methylase of chemotaxis methyl-acceptin...    30   9.5  
UniRef50_A0VI13 Cluster: TPR repeat; n=1; Delftia acidovorans SP...    30   9.5  

>UniRef50_A7FIR2 Cluster: Gram-negative pili assembly chaperone;
           n=13; Yersinia|Rep: Gram-negative pili assembly
           chaperone - Yersinia pseudotuberculosis IP 31758
          Length = 246

 Score = 31.5 bits (68), Expect = 4.1
 Identities = 14/22 (63%), Positives = 15/22 (68%)
 Frame = +3

Query: 120 SRKNIDVQYVTICNPPTPQLIS 185
           S KNID QYV I N PTP  +S
Sbjct: 157 SLKNIDNQYVIIANNPTPYFVS 178


>UniRef50_A7SJT0 Cluster: Predicted protein; n=1; Nematostella
           vectensis|Rep: Predicted protein - Nematostella
           vectensis
          Length = 273

 Score = 30.7 bits (66), Expect = 7.2
 Identities = 14/22 (63%), Positives = 16/22 (72%)
 Frame = +2

Query: 44  NLSKQFSYTVYFNVILCINIII 109
           N SKQF  TVY NV+LC+  II
Sbjct: 150 NYSKQFLDTVYDNVLLCVVFII 171


>UniRef50_Q2SPQ3 Cluster: Methylase of chemotaxis methyl-accepting
           protein; n=1; Hahella chejuensis KCTC 2396|Rep:
           Methylase of chemotaxis methyl-accepting protein -
           Hahella chejuensis (strain KCTC 2396)
          Length = 282

 Score = 30.3 bits (65), Expect = 9.5
 Identities = 14/36 (38%), Positives = 20/36 (55%)
 Frame = +2

Query: 44  NLSKQFSYTVYFNVILCINIIIYSKIQKKYRCTICY 151
           NL K FS+   F+VI C N++IY   + K +    Y
Sbjct: 210 NLIKPFSFQHKFHVIFCRNVVIYFDRETKQKLIARY 245


>UniRef50_A0VI13 Cluster: TPR repeat; n=1; Delftia acidovorans
           SPH-1|Rep: TPR repeat - Delftia acidovorans SPH-1
          Length = 647

 Score = 30.3 bits (65), Expect = 9.5
 Identities = 12/44 (27%), Positives = 27/44 (61%)
 Frame = -3

Query: 230 LLLMHSSNTF*IDKYRYQLGCRGITNCNILYIYIFSGSYYILLY 99
           +LLM +S +    K R ++GC+G+++  ++++   S   Y+ L+
Sbjct: 484 VLLMGNSTSLYAQKVRQRMGCKGVSSDRLIFVERLSLQGYLALH 527


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 308,150,444
Number of Sequences: 1657284
Number of extensions: 5128824
Number of successful extensions: 10082
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 9858
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10081
length of database: 575,637,011
effective HSP length: 89
effective length of database: 428,138,735
effective search space used: 11131607110
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)