Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10816X
         (349 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC19C7.08c |||leucine carboxyl methyltransferase|Schizosacchar...    24   5.9  
SPAC1296.05c |||cyclin L family cyclin|Schizosaccharomyces pombe...    24   7.8  
SPCC663.01c |ekc1|SPCC777.16c|protein phosphatase regulatory sub...    24   7.8  

>SPBC19C7.08c |||leucine carboxyl
           methyltransferase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 681

 Score = 24.2 bits (50), Expect = 5.9
 Identities = 11/18 (61%), Positives = 12/18 (66%)
 Frame = +2

Query: 248 E*HAQNCESFYC*LNLLN 301
           E H +N  SF C LNLLN
Sbjct: 153 EIHTKNYHSFGCNLNLLN 170


>SPAC1296.05c |||cyclin L family cyclin|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 258

 Score = 23.8 bits (49), Expect = 7.8
 Identities = 8/10 (80%), Positives = 9/10 (90%)
 Frame = -2

Query: 48  RLCINYPPFS 19
           RLC+ YPPFS
Sbjct: 186 RLCVLYPPFS 195


>SPCC663.01c |ekc1|SPCC777.16c|protein phosphatase regulatory
           subunit Ekc1 |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 838

 Score = 23.8 bits (49), Expect = 7.8
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = -3

Query: 299 LINLINNKSFHNFARATL 246
           L+NLIN++ + NF   TL
Sbjct: 627 LLNLINDEKWQNFVNKTL 644


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,379,595
Number of Sequences: 5004
Number of extensions: 25053
Number of successful extensions: 41
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 41
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 41
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 104153322
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)