Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10816X
         (349 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_37970| Best HMM Match : 7tm_1 (HMM E-Value=1.2e-19)                 31   0.34 
SB_47880| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   1.0  
SB_26007| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   7.3  

>SB_37970| Best HMM Match : 7tm_1 (HMM E-Value=1.2e-19)
          Length = 312

 Score = 30.7 bits (66), Expect = 0.34
 Identities = 14/22 (63%), Positives = 16/22 (72%)
 Frame = +2

Query: 44  NLSKQFSYTVYFNVILCINIII 109
           N SKQF  TVY NV+LC+  II
Sbjct: 150 NYSKQFLDTVYDNVLLCVVFII 171


>SB_47880| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 244

 Score = 29.1 bits (62), Expect = 1.0
 Identities = 12/35 (34%), Positives = 23/35 (65%)
 Frame = +2

Query: 44  NLSKQFSYTVYFNVILCINIIIYSKIQKKYRCTIC 148
           NLS++ +  +  N +LC+N  + ++I++ YRC  C
Sbjct: 39  NLSEENAVGLVLNKLLCLN-TVSTRIKRYYRCHSC 72


>SB_26007| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1145

 Score = 26.2 bits (55), Expect = 7.3
 Identities = 7/14 (50%), Positives = 12/14 (85%)
 Frame = +2

Query: 167 YTPIDIDICRFRMY 208
           Y P+D+D+CR R++
Sbjct: 662 YAPLDVDLCRVRLH 675


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,581,652
Number of Sequences: 59808
Number of extensions: 160294
Number of successful extensions: 259
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 245
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 259
length of database: 16,821,457
effective HSP length: 73
effective length of database: 12,455,473
effective search space used: 523129866
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)