Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10816X
         (349 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF039048-12|AAB94241.2|  296|Caenorhabditis elegans Hypothetical...    27   4.9  
Z81589-11|CAI58924.1|  330|Caenorhabditis elegans Hypothetical p...    26   6.4  
Z81555-8|CAB04512.2|  330|Caenorhabditis elegans Hypothetical pr...    26   6.4  
Z47812-1|CAA87795.2| 1326|Caenorhabditis elegans Hypothetical pr...    26   8.5  

>AF039048-12|AAB94241.2|  296|Caenorhabditis elegans Hypothetical
           protein F16B4.10 protein.
          Length = 296

 Score = 26.6 bits (56), Expect = 4.9
 Identities = 8/20 (40%), Positives = 15/20 (75%)
 Frame = +2

Query: 59  FSYTVYFNVILCINIIIYSK 118
           F   ++F +ILCI ++++SK
Sbjct: 178 FPVIIFFTIILCIKLMLFSK 197


>Z81589-11|CAI58924.1|  330|Caenorhabditis elegans Hypothetical
           protein F58E10.6 protein.
          Length = 330

 Score = 26.2 bits (55), Expect = 6.4
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = -1

Query: 214 RLIHSKSTNIDINWGVGGLQIVTYCTSIFFL 122
           RLIH  +TN  +NW      ++ Y  S+ F+
Sbjct: 122 RLIHGHTTNGSLNWKRTLYVVLNYTISVTFI 152


>Z81555-8|CAB04512.2|  330|Caenorhabditis elegans Hypothetical
           protein F58E10.6 protein.
          Length = 330

 Score = 26.2 bits (55), Expect = 6.4
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = -1

Query: 214 RLIHSKSTNIDINWGVGGLQIVTYCTSIFFL 122
           RLIH  +TN  +NW      ++ Y  S+ F+
Sbjct: 122 RLIHGHTTNGSLNWKRTLYVVLNYTISVTFI 152


>Z47812-1|CAA87795.2| 1326|Caenorhabditis elegans Hypothetical
           protein T05H10.1 protein.
          Length = 1326

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = +1

Query: 151 QFVIPLHPN*YRYLSI*NVLDECISNSLLK 240
           Q+ IP+  N +RY+ + N    C  NSL++
Sbjct: 75  QYAIPVDENGHRYVGLVNQAMTCYLNSLVQ 104


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,523,715
Number of Sequences: 27780
Number of extensions: 135077
Number of successful extensions: 267
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 266
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 267
length of database: 12,740,198
effective HSP length: 72
effective length of database: 10,740,038
effective search space used: 461821634
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)