Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10816X
         (349 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g53440.1 68414.m06057 leucine-rich repeat family protein / pr...    27   3.4  
At3g16555.1 68416.m02115 F-box family protein contains F-box dom...    26   6.0  

>At1g53440.1 68414.m06057 leucine-rich repeat family protein /
           protein kinase family protein contains Pfam domains
           PF00560: Leucine Rich Repeat and PF00069: Protein kinase
           domain
          Length = 1035

 Score = 27.1 bits (57), Expect = 3.4
 Identities = 15/51 (29%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
 Frame = +3

Query: 51  LNSFHILYISM-LFYA*I**YIVRSRKNIDVQYVTICNPPTPQLISIFVDL 200
           LN+F+ +Y++       +  +I+ S++NID+ Y     PPT     + V+L
Sbjct: 327 LNAFNFMYLNNNSLTGPVPQFILDSKQNIDLSYNNFTQPPTLSCNQLDVNL 377


>At3g16555.1 68416.m02115 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 349

 Score = 26.2 bits (55), Expect = 6.0
 Identities = 11/30 (36%), Positives = 15/30 (50%)
 Frame = -3

Query: 176 LGCRGITNCNILYIYIFSGSYYILLYLCIK 87
           L CR    C++L + +F G    LL  C K
Sbjct: 214 LPCRKFDKCDLLALQVFKGDRLSLLNQCCK 243


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,809,087
Number of Sequences: 28952
Number of extensions: 114558
Number of successful extensions: 164
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 164
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 164
length of database: 12,070,560
effective HSP length: 72
effective length of database: 9,986,016
effective search space used: 429398688
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)