Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10814
         (286 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q08YR6 Cluster: PepSY-associated membrane protein; n=7;...    36   0.23 
UniRef50_Q4N3J4 Cluster: Putative uncharacterized protein; n=1; ...    34   0.53 
UniRef50_A0RRN8 Cluster: UshA protein; n=1; Campylobacter fetus ...    32   2.8  
UniRef50_Q24HZ6 Cluster: Putative uncharacterized protein; n=1; ...    31   4.9  
UniRef50_A2QHS6 Cluster: Putative uncharacterized protein precur...    31   4.9  
UniRef50_UPI0000ECCE9A Cluster: Coiled-coil domain-containing pr...    31   6.5  
UniRef50_Q5NQH9 Cluster: Signal transduction protein; n=1; Zymom...    31   6.5  
UniRef50_Q8I5Y7 Cluster: Putative uncharacterized protein; n=3; ...    31   6.5  
UniRef50_A0CG59 Cluster: Chromosome undetermined scaffold_178, w...    31   6.5  
UniRef50_A4Y8P8 Cluster: Putative uncharacterized protein; n=1; ...    30   8.6  
UniRef50_Q8I2J5 Cluster: Putative uncharacterized protein PFI156...    30   8.6  
UniRef50_Q5CV17 Cluster: Putative uncharacterized protein; n=1; ...    30   8.6  
UniRef50_Q4QES4 Cluster: Putative uncharacterized protein; n=3; ...    30   8.6  
UniRef50_P21421 Cluster: DNA-directed RNA polymerase subunit bet...    30   8.6  

>UniRef50_Q08YR6 Cluster: PepSY-associated membrane protein; n=7;
           Proteobacteria|Rep: PepSY-associated membrane protein -
           Stigmatella aurantiaca DW4/3-1
          Length = 631

 Score = 35.5 bits (78), Expect = 0.23
 Identities = 16/40 (40%), Positives = 20/40 (50%)
 Frame = +3

Query: 111 RQSARRMNCWWN*HMQLGILNLYFHILLMQTNFKIIVYNY 230
           R  A R   W + H  LG+L L FH+L+  T   I V  Y
Sbjct: 289 RPQATRQRAWLDAHNVLGVLGLPFHLLIAYTGLAIFVITY 328


>UniRef50_Q4N3J4 Cluster: Putative uncharacterized protein; n=1;
            Theileria parva|Rep: Putative uncharacterized protein -
            Theileria parva
          Length = 3588

 Score = 34.3 bits (75), Expect = 0.53
 Identities = 16/50 (32%), Positives = 21/50 (42%)
 Frame = -2

Query: 204  LFASVICGNTGLKFLAAYANSTNSSSFLQTVDYLFPHGCLSYISWYCVIC 55
            L A VICG+T  +    Y  +           Y+FP G L Y    C +C
Sbjct: 1650 LDACVICGSTAFQSYLMYCENCAEPMHYYCAGYIFPPGYLKYNKLKCALC 1699


>UniRef50_A0RRN8 Cluster: UshA protein; n=1; Campylobacter fetus
           subsp. fetus 82-40|Rep: UshA protein - Campylobacter
           fetus subsp. fetus (strain 82-40)
          Length = 508

 Score = 31.9 bits (69), Expect = 2.8
 Identities = 21/65 (32%), Positives = 32/65 (49%)
 Frame = +2

Query: 71  QDI*LKQPWGNK*STVCKKDELLVELAYAARNFKPVFPHITDANKFQNYCI*LLNKTIIK 250
           +DI +  P+ N  S V  K + ++EL     N KP F      +K  ++ I   NKTI+ 
Sbjct: 389 KDILISMPFPNTISAVSLKGDEVMELFNYIINIKPGFGGFAQISKDVSFTIDSSNKTILN 448

Query: 251 LFYKS 265
           L  K+
Sbjct: 449 LKIKN 453


>UniRef50_Q24HZ6 Cluster: Putative uncharacterized protein; n=1;
            Tetrahymena thermophila SB210|Rep: Putative
            uncharacterized protein - Tetrahymena thermophila SB210
          Length = 1567

 Score = 31.1 bits (67), Expect = 4.9
 Identities = 17/48 (35%), Positives = 26/48 (54%), Gaps = 3/48 (6%)
 Frame = +2

Query: 119  CKKDELLVELAYAARNF--KPVFPHITDANKFQNYCI*L-LNKTIIKL 253
            CK+   L+ + Y A +F  +P+      ANK  NYCI   L +T +K+
Sbjct: 1492 CKQSSYLIRIIYYAMHFLQQPISARAVPANKQINYCIVFELQRTKLKM 1539


>UniRef50_A2QHS6 Cluster: Putative uncharacterized protein
           precursor; n=1; Aspergillus niger|Rep: Putative
           uncharacterized protein precursor - Aspergillus niger
          Length = 163

 Score = 31.1 bits (67), Expect = 4.9
 Identities = 16/36 (44%), Positives = 19/36 (52%)
 Frame = +3

Query: 21  FSMKSRVYSNYNKLHSTRIYNLNNHGGINSRQSARR 128
           F    RV SNY + HS+R+ NL    G   RQ  RR
Sbjct: 87  FGFNIRVESNYKEYHSSRVINLEKEEG---RQEGRR 119


>UniRef50_UPI0000ECCE9A Cluster: Coiled-coil domain-containing
           protein 102B.; n=1; Gallus gallus|Rep: Coiled-coil
           domain-containing protein 102B. - Gallus gallus
          Length = 420

 Score = 30.7 bits (66), Expect = 6.5
 Identities = 16/45 (35%), Positives = 24/45 (53%)
 Frame = +2

Query: 86  KQPWGNK*STVCKKDELLVELAYAARNFKPVFPHITDANKFQNYC 220
           +QP  NK   +C+ D+ L    + ++NF P  PH T  +   NYC
Sbjct: 21  RQP--NKLDEICQTDDNLCNSNFPSQNFYPYSPHYTYMH--MNYC 61


>UniRef50_Q5NQH9 Cluster: Signal transduction protein; n=1;
           Zymomonas mobilis|Rep: Signal transduction protein -
           Zymomonas mobilis
          Length = 683

 Score = 30.7 bits (66), Expect = 6.5
 Identities = 20/42 (47%), Positives = 21/42 (50%)
 Frame = -1

Query: 220 TIILKFVCISNMWKYRFKIPSCIC*FHQQFILLADCRLFIPP 95
           TII  F CI     YR KI S I  F  QFI   +   FIPP
Sbjct: 163 TIIFGFFCI-----YRLKISSFIVFFTSQFIYFLNLFHFIPP 199


>UniRef50_Q8I5Y7 Cluster: Putative uncharacterized protein; n=3;
          Plasmodium|Rep: Putative uncharacterized protein -
          Plasmodium falciparum (isolate 3D7)
          Length = 2284

 Score = 30.7 bits (66), Expect = 6.5
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +3

Query: 18 HFSMKSRVYSNYNKLHSTRIYNLNNH 95
          HF     + + YNKL+  R Y++NNH
Sbjct: 15 HFLENKNLINEYNKLYMHRYYHINNH 40


>UniRef50_A0CG59 Cluster: Chromosome undetermined scaffold_178,
           whole genome shotgun sequence; n=1; Paramecium
           tetraurelia|Rep: Chromosome undetermined scaffold_178,
           whole genome shotgun sequence - Paramecium tetraurelia
          Length = 2030

 Score = 30.7 bits (66), Expect = 6.5
 Identities = 18/56 (32%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
 Frame = -2

Query: 180 NTGLKFLAAYANSTNSSSFLQTVD-YLFPHGCLSYISWYCVICCNLSTLCFSLKSG 16
           N+ +K  +   N +N S+ L  V  Y F +G  S     C +C   +T C S +SG
Sbjct: 496 NSCIKCTSPCQNCSNDSTCLSCVPGYYFSNGLCSKCDNACQLCSGSATSCSSCQSG 551


>UniRef50_A4Y8P8 Cluster: Putative uncharacterized protein; n=1;
           Shewanella putrefaciens CN-32|Rep: Putative
           uncharacterized protein - Shewanella putrefaciens CN-32
          Length = 744

 Score = 30.3 bits (65), Expect = 8.6
 Identities = 21/58 (36%), Positives = 27/58 (46%), Gaps = 3/58 (5%)
 Frame = -1

Query: 235 IQ*LYTIILKFVCISNMW---KYRFKIPSCIC*FHQQFILLADCRLFIPPWLFKLYIL 71
           IQ L  + +KF    N+W   KYR   P  I   H   IL +  +LF  P   K+Y L
Sbjct: 296 IQNLNDVYVKFKKADNLWEKGKYRTPYPKIILSTHSPAILKSVIKLFNTPEEHKIYHL 353


>UniRef50_Q8I2J5 Cluster: Putative uncharacterized protein PFI1560c;
           n=2; Plasmodium|Rep: Putative uncharacterized protein
           PFI1560c - Plasmodium falciparum (isolate 3D7)
          Length = 1247

 Score = 30.3 bits (65), Expect = 8.6
 Identities = 11/30 (36%), Positives = 19/30 (63%)
 Frame = +3

Query: 18  HFSMKSRVYSNYNKLHSTRIYNLNNHGGIN 107
           + ++K +  SNY  ++S  IYN+NN+   N
Sbjct: 337 YLNVKKKFISNYQGIYSNEIYNINNNNKEN 366


>UniRef50_Q5CV17 Cluster: Putative uncharacterized protein; n=1;
           Cryptosporidium parvum Iowa II|Rep: Putative
           uncharacterized protein - Cryptosporidium parvum Iowa II
          Length = 242

 Score = 30.3 bits (65), Expect = 8.6
 Identities = 16/35 (45%), Positives = 21/35 (60%)
 Frame = -1

Query: 133 FILLADCRLFIPPWLFKLYILVLCNLL*FEYTLLF 29
           F+L   C LFI   LF L+IL L + L   ++LLF
Sbjct: 165 FVLFILCHLFILHLLFVLFILCLLSFLYLLFSLLF 199


>UniRef50_Q4QES4 Cluster: Putative uncharacterized protein; n=3;
           Leishmania|Rep: Putative uncharacterized protein -
           Leishmania major
          Length = 488

 Score = 30.3 bits (65), Expect = 8.6
 Identities = 14/32 (43%), Positives = 18/32 (56%)
 Frame = +3

Query: 51  YNKLHSTRIYNLNNHGGINSRQSARRMNCWWN 146
           + K HSTR+   NNH    + Q A+   CWWN
Sbjct: 405 HGKGHSTRV---NNHLDKWAPQHAKSWGCWWN 433


>UniRef50_P21421 Cluster: DNA-directed RNA polymerase subunit beta;
           n=5; Plasmodium|Rep: DNA-directed RNA polymerase subunit
           beta - Plasmodium falciparum
          Length = 1024

 Score = 30.3 bits (65), Expect = 8.6
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = +3

Query: 24  SMKSRVYSNYNKLHSTRIYNLNNHGGINSRQS 119
           ++    Y+NYN + +   YN NN+  INS+ S
Sbjct: 838 NLNKNYYNNYNHIFNYYKYNYNNNFNINSKMS 869


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 273,405,428
Number of Sequences: 1657284
Number of extensions: 4929049
Number of successful extensions: 13094
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 12510
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13053
length of database: 575,637,011
effective HSP length: 72
effective length of database: 456,312,563
effective search space used: 10038876386
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)