Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV10814
(286 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces pomb... 28 0.23
SPBC119.17 ||SPBC577.01|metallopeptidase|Schizosaccharomyces pom... 25 1.6
SPCC16A11.08 |atg20||sorting nexin Atg20|Schizosaccharomyces pom... 25 2.8
SPAC13F5.02c |ptr6|taf7|transcription factor TFIID complex subun... 24 3.7
SPAC17G6.11c |||glucosidase |Schizosaccharomyces pombe|chr 1|||M... 24 4.9
SPAC18G6.04c |shm2||serine hydroxymethyltransferase Shm2 |Schizo... 24 4.9
SPBC409.08 |||spermine family transporter |Schizosaccharomyces p... 24 4.9
SPAC7D4.09c |||steroid dehydrogenase |Schizosaccharomyces pombe|... 23 6.5
SPBPB10D8.04c |||membrane transporter |Schizosaccharomyces pombe... 23 6.5
SPBPB10D8.05c |||membrane transporter |Schizosaccharomyces pombe... 23 6.5
SPAC9.03c |brr2|spp41|U5 snRNP complex subunit Brr2 |Schizosacch... 23 6.5
SPCC1259.11c |gyp2||GTPase activating protein Gyp2 |Schizosaccha... 23 6.5
SPAC11E3.14 |||conserved protein|Schizosaccharomyces pombe|chr 1... 23 6.5
SPBPB10D8.06c |||membrane transporter |Schizosaccharomyces pombe... 23 6.5
SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit ... 23 6.5
SPCC61.01c |str2|str1, SPCC622.20c|siderophore-iron transporter ... 23 6.5
SPBPB10D8.07c |||membrane transporter |Schizosaccharomyces pombe... 23 6.5
SPAC31A2.15c |dcc1||DNA replication factor C complex subunit Dcc... 23 8.5
>SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 2386
Score = 28.3 bits (60), Expect = 0.23
Identities = 17/53 (32%), Positives = 25/53 (47%), Gaps = 2/53 (3%)
Frame = -2
Query: 162 LAAYANSTNSSSFLQTVDYLFP--HGCLSYISWYCVICCNLSTLCFSLKSGEI 10
L Y + +Q D++ H CL + W I +L + CFSLK+ EI
Sbjct: 965 LFPYLEPQEAELVIQIFDFISSDTHKCLQGLKW--AIPTSLDSACFSLKAKEI 1015
>SPBC119.17 ||SPBC577.01|metallopeptidase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 992
Score = 25.4 bits (53), Expect = 1.6
Identities = 9/21 (42%), Positives = 11/21 (52%)
Frame = -2
Query: 102 FPHGCLSYISWYCVICCNLST 40
FP + Y+ YC C NL T
Sbjct: 589 FPESLIPYLPVYCDACLNLGT 609
>SPCC16A11.08 |atg20||sorting nexin Atg20|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 534
Score = 24.6 bits (51), Expect = 2.8
Identities = 9/17 (52%), Positives = 13/17 (76%)
Frame = -3
Query: 140 PTVHPSCRLSTIYSPMV 90
PT+HP+ RL+TI +V
Sbjct: 410 PTIHPATRLNTIQRAVV 426
>SPAC13F5.02c |ptr6|taf7|transcription factor TFIID complex subunit
Taf7|Schizosaccharomyces pombe|chr 1|||Manual
Length = 393
Score = 24.2 bits (50), Expect = 3.7
Identities = 7/18 (38%), Positives = 12/18 (66%)
Frame = -2
Query: 123 LQTVDYLFPHGCLSYISW 70
L+ DY++PHG + + W
Sbjct: 172 LKQADYIYPHGLTTPMHW 189
>SPAC17G6.11c |||glucosidase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 636
Score = 23.8 bits (49), Expect = 4.9
Identities = 8/18 (44%), Positives = 12/18 (66%)
Frame = +3
Query: 42 YSNYNKLHSTRIYNLNNH 95
Y+ +N L STR+ + NH
Sbjct: 193 YTGHNSLASTRVTGITNH 210
>SPAC18G6.04c |shm2||serine hydroxymethyltransferase Shm2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 472
Score = 23.8 bits (49), Expect = 4.9
Identities = 12/32 (37%), Positives = 15/32 (46%)
Frame = +3
Query: 9 LFHHFSMKSRVYSNYNKLHSTRIYNLNNHGGI 104
L H FS + S + ST YN+N GI
Sbjct: 141 LSHGFSTPQKAISAVSTYFSTMPYNVNKETGI 172
>SPBC409.08 |||spermine family transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 539
Score = 23.8 bits (49), Expect = 4.9
Identities = 11/32 (34%), Positives = 14/32 (43%)
Frame = -2
Query: 99 PHGCLSYISWYCVICCNLSTLCFSLKSGEIAG 4
PH WY I +L +C + S IAG
Sbjct: 92 PHNWSRLWKWYITIVNSLLVVCSAFGSSVIAG 123
>SPAC7D4.09c |||steroid dehydrogenase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 274
Score = 23.4 bits (48), Expect = 6.5
Identities = 8/29 (27%), Positives = 17/29 (58%)
Frame = +3
Query: 138 WWN*HMQLGILNLYFHILLMQTNFKIIVY 224
+W+ + + +LN F ++ TNF I ++
Sbjct: 65 FWHFYAFISLLNPLFTFFILNTNFPIPIF 93
>SPBPB10D8.04c |||membrane transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 23.4 bits (48), Expect = 6.5
Identities = 11/25 (44%), Positives = 14/25 (56%)
Frame = -1
Query: 226 LYTIILKFVCISNMWKYRFKIPSCI 152
L TI+ F+C SN F I +CI
Sbjct: 187 LNTIVTSFICWSNAIALGFCIIACI 211
>SPBPB10D8.05c |||membrane transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 23.4 bits (48), Expect = 6.5
Identities = 11/25 (44%), Positives = 14/25 (56%)
Frame = -1
Query: 226 LYTIILKFVCISNMWKYRFKIPSCI 152
L TI+ F+C SN F I +CI
Sbjct: 187 LNTIVTSFICWSNAIALGFCIIACI 211
>SPAC9.03c |brr2|spp41|U5 snRNP complex subunit Brr2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2176
Score = 23.4 bits (48), Expect = 6.5
Identities = 11/32 (34%), Positives = 16/32 (50%)
Frame = -2
Query: 171 LKFLAAYANSTNSSSFLQTVDYLFPHGCLSYI 76
LK AY + SS+ V YL+ HG + +
Sbjct: 1648 LKHGIAYISEITSSNDQNIVQYLYRHGLIKVL 1679
>SPCC1259.11c |gyp2||GTPase activating protein Gyp2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 720
Score = 23.4 bits (48), Expect = 6.5
Identities = 13/40 (32%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
Frame = -1
Query: 151 C*FHQQFILLAD-CRLFIPPWLFKLYILVLCNLL*FEYTL 35
C Q + L + C +IP + K+ +L +L FEY L
Sbjct: 315 CTEEQAYFLFSQLCEFYIPGYYAKIIHGLLLDLTVFEYVL 354
>SPAC11E3.14 |||conserved protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 588
Score = 23.4 bits (48), Expect = 6.5
Identities = 10/25 (40%), Positives = 17/25 (68%)
Frame = -1
Query: 130 ILLADCRLFIPPWLFKLYILVLCNL 56
I +AD + +PP+ +YI V+C+L
Sbjct: 439 ISIADA-MDVPPYAELIYIFVICSL 462
>SPBPB10D8.06c |||membrane transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 23.4 bits (48), Expect = 6.5
Identities = 11/25 (44%), Positives = 14/25 (56%)
Frame = -1
Query: 226 LYTIILKFVCISNMWKYRFKIPSCI 152
L TI+ F+C SN F I +CI
Sbjct: 187 LNTIVTSFICWSNAIALGFCIIACI 211
>SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit
Bgs4|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1955
Score = 23.4 bits (48), Expect = 6.5
Identities = 10/26 (38%), Positives = 12/26 (46%)
Frame = -2
Query: 102 FPHGCLSYISWYCVICCNLSTLCFSL 25
F + LS I W CV C + F L
Sbjct: 680 FDNQALSVIIWVCVFTCKFAESYFFL 705
>SPCC61.01c |str2|str1, SPCC622.20c|siderophore-iron transporter
Str2 |Schizosaccharomyces pombe|chr 3|||Manual
Length = 597
Score = 23.4 bits (48), Expect = 6.5
Identities = 13/40 (32%), Positives = 20/40 (50%)
Frame = -2
Query: 249 FIIVLFNSYIQ*F*NLFASVICGNTGLKFLAAYANSTNSS 130
++ + F+ IQ F + ICG TGL L+ + SS
Sbjct: 145 YLSLAFSRNIQMFTVAYILYICGQTGLGLLSQLIIADTSS 184
>SPBPB10D8.07c |||membrane transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 23.4 bits (48), Expect = 6.5
Identities = 11/25 (44%), Positives = 14/25 (56%)
Frame = -1
Query: 226 LYTIILKFVCISNMWKYRFKIPSCI 152
L TI+ F+C SN F I +CI
Sbjct: 187 LNTIVTSFICWSNAIALGFCIIACI 211
>SPAC31A2.15c |dcc1||DNA replication factor C complex subunit Dcc1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 349
Score = 23.0 bits (47), Expect = 8.5
Identities = 10/27 (37%), Positives = 14/27 (51%)
Frame = -2
Query: 168 KFLAAYANSTNSSSFLQTVDYLFPHGC 88
+FL NS +S F+Q D P+ C
Sbjct: 240 RFLLEGINSISSDEFIQLWDNRLPYPC 266
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,217,136
Number of Sequences: 5004
Number of extensions: 23475
Number of successful extensions: 58
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 58
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 58
length of database: 2,362,478
effective HSP length: 62
effective length of database: 2,052,230
effective search space used: 65671360
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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