Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10814
         (286 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_49940| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   1.8  
SB_450| Best HMM Match : BCCT (HMM E-Value=5.2e-08)                    27   3.2  
SB_37288| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   3.2  
SB_2948| Best HMM Match : Galactosyl_T (HMM E-Value=7.5)               27   3.2  
SB_44696| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   5.6  
SB_53413| Best HMM Match : No HMM Matches (HMM E-Value=.)              25   7.4  
SB_28657| Best HMM Match : No HMM Matches (HMM E-Value=.)              25   7.4  
SB_47334| Best HMM Match : No HMM Matches (HMM E-Value=.)              25   7.4  
SB_27169| Best HMM Match : BCCT (HMM E-Value=0)                        25   7.4  
SB_21686| Best HMM Match : No HMM Matches (HMM E-Value=.)              25   7.4  
SB_30330| Best HMM Match : No HMM Matches (HMM E-Value=.)              25   9.8  
SB_22736| Best HMM Match : F5_F8_type_C (HMM E-Value=6.4e-24)          25   9.8  
SB_48947| Best HMM Match : NADH5_C (HMM E-Value=0.49)                  25   9.8  
SB_36596| Best HMM Match : PSP (HMM E-Value=3.3e-18)                   25   9.8  
SB_28995| Best HMM Match : LicD (HMM E-Value=0.018)                    25   9.8  
SB_4797| Best HMM Match : LRR_1 (HMM E-Value=6.7e-13)                  25   9.8  

>SB_49940| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 569

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 9/26 (34%), Positives = 18/26 (69%)
 Frame = +3

Query: 15  HHFSMKSRVYSNYNKLHSTRIYNLNN 92
           HH   KSR  + +N  H+TR++++++
Sbjct: 170 HHHVTKSRHQTKHNAKHATRVFSIDS 195


>SB_450| Best HMM Match : BCCT (HMM E-Value=5.2e-08)
          Length = 444

 Score = 26.6 bits (56), Expect = 3.2
 Identities = 10/16 (62%), Positives = 14/16 (87%)
 Frame = -1

Query: 226 LYTIILKFVCISNMWK 179
           LYT++L FVCIS +W+
Sbjct: 246 LYTVVLNFVCIS-IWR 260


>SB_37288| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 166

 Score = 26.6 bits (56), Expect = 3.2
 Identities = 14/26 (53%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
 Frame = -2

Query: 195 SVICGNTGL-KFLAAYANSTNSSSFL 121
           SV   +TG+ KF+ AY NSTN  S L
Sbjct: 67  SVFYHDTGVNKFVVAYVNSTNEFSLL 92


>SB_2948| Best HMM Match : Galactosyl_T (HMM E-Value=7.5)
          Length = 361

 Score = 26.6 bits (56), Expect = 3.2
 Identities = 14/26 (53%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
 Frame = -2

Query: 195 SVICGNTGL-KFLAAYANSTNSSSFL 121
           SV   +TG+ KF+ AY NSTN  S L
Sbjct: 262 SVFYHDTGVNKFVVAYVNSTNEFSLL 287


>SB_44696| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 695

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 11/32 (34%), Positives = 16/32 (50%)
 Frame = +3

Query: 45  SNYNKLHSTRIYNLNNHGGINSRQSARRMNCW 140
           +N N  +S  I N NN+   N+ +   R N W
Sbjct: 225 NNNNNSNSNSINNNNNNNNNNNNKCLERTNSW 256


>SB_53413| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 304

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 12/36 (33%), Positives = 19/36 (52%)
 Frame = -1

Query: 115 CRLFIPPWLFKLYILVLCNLL*FEYTLLFIEKW*NS 8
           C L    WL  LY++  CN    E T++ + ++ NS
Sbjct: 84  CNLLFQYWLTCLYLIPSCNTSVEETTIVALLRYLNS 119


>SB_28657| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3296

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 15/38 (39%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
 Frame = +3

Query: 96   GGINS-RQSARRMNCWWN*HMQLGILNLYFHILLMQTN 206
            GG  S R   RRM   W    QLG +N  F +++  TN
Sbjct: 1040 GGCTSIRFLIRRMPLRWLVEHQLGFINALFFVMMDLTN 1077


>SB_47334| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 292

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 12/37 (32%), Positives = 21/37 (56%)
 Frame = -1

Query: 136 QFILLADCRLFIPPWLFKLYILVLCNLL*FEYTLLFI 26
           Q + L    L +P W+  + IL L  ++ F YT++F+
Sbjct: 120 QVVNLKFRNLLLPYWIPHVIILGLLLIIAFSYTVVFV 156


>SB_27169| Best HMM Match : BCCT (HMM E-Value=0)
          Length = 583

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 10/16 (62%), Positives = 13/16 (81%)
 Frame = -1

Query: 226 LYTIILKFVCISNMWK 179
           LYT+IL FVCI+  W+
Sbjct: 459 LYTVILNFVCIAT-WR 473


>SB_21686| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 798

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 10/16 (62%), Positives = 13/16 (81%)
 Frame = -1

Query: 226 LYTIILKFVCISNMWK 179
           LYT+IL FVCI+  W+
Sbjct: 624 LYTVILNFVCIAT-WR 638


>SB_30330| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 186

 Score = 25.0 bits (52), Expect = 9.8
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = +3

Query: 48  NYNKLHSTRIYNLNNHGGINSRQS 119
           N N LH T I N+N H  ++S  +
Sbjct: 111 NNNTLHRTLITNINEHSFLSSNSN 134


>SB_22736| Best HMM Match : F5_F8_type_C (HMM E-Value=6.4e-24)
          Length = 1039

 Score = 25.0 bits (52), Expect = 9.8
 Identities = 11/38 (28%), Positives = 19/38 (50%)
 Frame = +3

Query: 21  FSMKSRVYSNYNKLHSTRIYNLNNHGGINSRQSARRMN 134
           +S+  R +SNY +    +I+N+    G +  Q   R N
Sbjct: 875 YSLDGRTWSNYTERGQVKIFNVLLAEGYDCAQRQNRSN 912


>SB_48947| Best HMM Match : NADH5_C (HMM E-Value=0.49)
          Length = 358

 Score = 25.0 bits (52), Expect = 9.8
 Identities = 13/36 (36%), Positives = 20/36 (55%), Gaps = 3/36 (8%)
 Frame = -2

Query: 141 TNSSSFLQTVDYLF---PHGCLSYISWYCVICCNLS 43
           T S++FLQ + Y+F   P     +I+W  +I C  S
Sbjct: 266 TFSNNFLQVIFYIFPMVPRFGTWWINWAALISCGTS 301


>SB_36596| Best HMM Match : PSP (HMM E-Value=3.3e-18)
          Length = 855

 Score = 25.0 bits (52), Expect = 9.8
 Identities = 8/15 (53%), Positives = 9/15 (60%)
 Frame = -2

Query: 90  CLSYISWYCVICCNL 46
           C+ Y   YCV CC L
Sbjct: 345 CVRYFDIYCVDCCGL 359


>SB_28995| Best HMM Match : LicD (HMM E-Value=0.018)
          Length = 1164

 Score = 25.0 bits (52), Expect = 9.8
 Identities = 12/35 (34%), Positives = 17/35 (48%), Gaps = 2/35 (5%)
 Frame = -2

Query: 99  PHGCLSYISWYCVICCNLSTL--CFSLKSGEIAGQ 1
           P     Y +W+CV C   S    CF L++ E + Q
Sbjct: 344 PFKWCKYFAWFCVSCLQKSAKPHCFRLQAVERSTQ 378


>SB_4797| Best HMM Match : LRR_1 (HMM E-Value=6.7e-13)
          Length = 335

 Score = 25.0 bits (52), Expect = 9.8
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = +2

Query: 20  LFNEKQSVLKLQQITQYQDI*LKQPWGNK*STVC 121
           +F+E   V K+  +   +DI  K P+ NK + VC
Sbjct: 253 MFSEDPEVNKMSILPGMEDILKKYPFQNKFTAVC 286


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,268,828
Number of Sequences: 59808
Number of extensions: 145370
Number of successful extensions: 362
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 307
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 362
length of database: 16,821,457
effective HSP length: 70
effective length of database: 12,634,897
effective search space used: 303237528
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)