Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10810X
         (405 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    31   0.051
SPAC24B11.07c |||ketopantoate reductase |Schizosaccharomyces pom...    27   0.84 
SPBC16E9.11c |pub3||ubiquitin-protein ligase E3|Schizosaccharomy...    27   0.84 
SPAC19A8.12 |dcp2||mRNA decapping complex subunit Dcp2|Schizosac...    26   2.6  
SPAC26A3.09c |rga2||GTPase activating protein Rga2|Schizosacchar...    25   3.4  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    25   5.9  
SPBP35G2.09 |usp103|yhc1|U1 snRNP-associated protein Usp103 |Sch...    24   7.8  

>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 800

 Score = 31.5 bits (68), Expect = 0.051
 Identities = 17/56 (30%), Positives = 20/56 (35%)
 Frame = +3

Query: 87  PPGGGHTNIFDSEPEPPRTGRRAVPPSATSTFSHGQGDEPKANNGTSVATNGQSTP 254
           PP G  T        P  T   + PP   ST S G    P  +  TS  T+    P
Sbjct: 292 PPTGNSTTPVTPTVPPTSTSSTSTPPPPASTSSTGTSSSPLPSTSTSCTTSTSIPP 347



 Score = 31.5 bits (68), Expect = 0.051
 Identities = 17/56 (30%), Positives = 20/56 (35%)
 Frame = +3

Query: 87  PPGGGHTNIFDSEPEPPRTGRRAVPPSATSTFSHGQGDEPKANNGTSVATNGQSTP 254
           PP G  T        P  T   + PP   ST S G    P  +  TS  T+    P
Sbjct: 346 PPTGNSTTPVTPTVPPTSTSSTSTPPPPASTSSTGTSSSPLLSTSTSCTTSTSIPP 401


>SPAC24B11.07c |||ketopantoate reductase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 561

 Score = 27.5 bits (58), Expect = 0.84
 Identities = 16/62 (25%), Positives = 30/62 (48%)
 Frame = +3

Query: 63  RLSSRVLXPPGGGHTNIFDSEPEPPRTGRRAVPPSATSTFSHGQGDEPKANNGTSVATNG 242
           R    VL P    HT+  +  PE  R G  + P S++ +  +     P +N+ ++ + NG
Sbjct: 448 RGGKNVLSPEAKEHTHK-NISPESSRFGTPSDPNSSSQSLGNEVLSRPNSNSNSAESRNG 506

Query: 243 QS 248
           ++
Sbjct: 507 ET 508


>SPBC16E9.11c |pub3||ubiquitin-protein ligase E3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 786

 Score = 27.5 bits (58), Expect = 0.84
 Identities = 27/85 (31%), Positives = 38/85 (44%), Gaps = 7/85 (8%)
 Frame = +3

Query: 18  KMTSTPFNVGLNDGARLSSRVLXPPGGGHT----NIFDSEPEPP--RTGRRAVPPSATST 179
           K ++T  +V  N   +++   +  P G H+    N   S P     RT R    P+AT+ 
Sbjct: 113 KSSTTNLSVLGNLVLKVAPSKIRAPAGNHSSTTANRTTSTPTTTTARTTRTTPRPTATTN 172

Query: 180 FSHGQGDEPKANNGTSVAT-NGQST 251
            S+ Q       NGTS AT NG  T
Sbjct: 173 TSN-QSTSNSTRNGTSAATSNGTGT 196


>SPAC19A8.12 |dcp2||mRNA decapping complex subunit
           Dcp2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 741

 Score = 25.8 bits (54), Expect = 2.6
 Identities = 13/32 (40%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
 Frame = +3

Query: 159 PPSATSTFSHGQGDEPK-ANNGTSVATNGQST 251
           PP++TS  S+G G  P+ A   +S   NG  T
Sbjct: 420 PPTSTSVSSYGLGKTPQPAYGSSSPYVNGHQT 451


>SPAC26A3.09c |rga2||GTPase activating protein
           Rga2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1275

 Score = 25.4 bits (53), Expect = 3.4
 Identities = 13/29 (44%), Positives = 18/29 (62%)
 Frame = -2

Query: 326 DCRLWERALLQQVPPAGSVAPGSPRSGLT 240
           D + W RA+L+QVP + S    SP S L+
Sbjct: 823 DQKSWLRAILRQVPGSTSPLNASPFSVLS 851


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 24.6 bits (51), Expect = 5.9
 Identities = 17/62 (27%), Positives = 28/62 (45%)
 Frame = +3

Query: 69  SSRVLXPPGGGHTNIFDSEPEPPRTGRRAVPPSATSTFSHGQGDEPKANNGTSVATNGQS 248
           +S +  PP    +N   S P PP+ GR A PP    + +   G +P   + +   +N  +
Sbjct: 333 NSSLPPPPPPPRSNAAGSIPLPPQ-GRSAPPPPPPRS-APSTGRQPPPLSSSRAVSNPPA 390

Query: 249 TP 254
            P
Sbjct: 391 PP 392


>SPBP35G2.09 |usp103|yhc1|U1 snRNP-associated protein Usp103
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 182

 Score = 24.2 bits (50), Expect = 7.8
 Identities = 13/54 (24%), Positives = 24/54 (44%), Gaps = 1/54 (1%)
 Frame = +1

Query: 64  VYQAGCSAPPVVATLTSSIPSRSHRGPGAVPFHQAQRALSATDK-EMSRKRTTA 222
           V+  GC  PP + +  + +  +      A  F     A++ T++   S  +TTA
Sbjct: 80  VFNLGCPPPPYIVSANTYMAPKGMNAMNAAAFVPMMPAVNLTNQVAFSAPQTTA 133


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,554,776
Number of Sequences: 5004
Number of extensions: 27159
Number of successful extensions: 81
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 77
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 81
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 138190552
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)