Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10810X
         (405 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_47026| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   0.82 
SB_57860| Best HMM Match : DUF1226 (HMM E-Value=1.5e-07)               28   2.5  
SB_5862| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   4.4  
SB_7151| Best HMM Match : TCP (HMM E-Value=0.92)                       27   5.8  
SB_37209| Best HMM Match : Ion_trans (HMM E-Value=1.7e-05)             27   5.8  
SB_56123| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.7  
SB_29219| Best HMM Match : 7tm_1 (HMM E-Value=9.8e-06)                 27   7.7  
SB_21364| Best HMM Match : Homeobox (HMM E-Value=0.27)                 27   7.7  
SB_47749| Best HMM Match : Plasmodium_HRP (HMM E-Value=0.068)          27   7.7  
SB_40655| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.7  

>SB_47026| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 209

 Score = 29.9 bits (64), Expect = 0.82
 Identities = 24/77 (31%), Positives = 35/77 (45%)
 Frame = +3

Query: 24  TSTPFNVGLNDGARLSSRVLXPPGGGHTNIFDSEPEPPRTGRRAVPPSATSTFSHGQGDE 203
           T+ P+N     G  + S     P  G T  ++  P  P  G   VPP+  +  S+G    
Sbjct: 103 TTVPYN-----GPTVPSNGTTVPSNGTTVPYNG-PTVPSNGA-TVPPNGATVPSNGT--- 152

Query: 204 PKANNGTSVATNGQSTP 254
              +NGT+V TNG + P
Sbjct: 153 TVPSNGTTVPTNGTTVP 169


>SB_57860| Best HMM Match : DUF1226 (HMM E-Value=1.5e-07)
          Length = 754

 Score = 28.3 bits (60), Expect = 2.5
 Identities = 12/32 (37%), Positives = 14/32 (43%)
 Frame = +3

Query: 78  VLXPPGGGHTNIFDSEPEPPRTGRRAVPPSAT 173
           V   P       F  E EPP+  R+  PPS T
Sbjct: 318 VTTSPSNARRRFFGFETEPPQASRQCSPPSRT 349


>SB_5862| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2353

 Score = 27.5 bits (58), Expect = 4.4
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = +3

Query: 117  DSEPEPPRTGRRAVPPSATSTF 182
            + EP PPRT  R+ PPS +S +
Sbjct: 2020 EREPLPPRTKMRSRPPSMSSIY 2041


>SB_7151| Best HMM Match : TCP (HMM E-Value=0.92)
          Length = 188

 Score = 27.1 bits (57), Expect = 5.8
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = +3

Query: 159 PPSATSTFSHGQGDEPKANNGTSVATNGQSTP 254
           PPS++S      G+     NG S   NG++TP
Sbjct: 103 PPSSSSLPELSSGNTHGETNGMSAKVNGRNTP 134


>SB_37209| Best HMM Match : Ion_trans (HMM E-Value=1.7e-05)
          Length = 822

 Score = 27.1 bits (57), Expect = 5.8
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = +3

Query: 159 PPSATSTFSHGQGDEPKANNGTSVATNGQSTP 254
           PPS++S      G+     NG S   NG++TP
Sbjct: 775 PPSSSSLPELSSGNTHGETNGMSAKVNGRNTP 806


>SB_56123| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 867

 Score = 26.6 bits (56), Expect = 7.7
 Identities = 11/39 (28%), Positives = 20/39 (51%)
 Frame = +3

Query: 129 EPPRTGRRAVPPSATSTFSHGQGDEPKANNGTSVATNGQ 245
           +P R G   +PP    +F H +   P+ + G+++ T  Q
Sbjct: 38  KPTRRGCHVLPPDPIPSFDHEELLTPREDGGSNLHTANQ 76


>SB_29219| Best HMM Match : 7tm_1 (HMM E-Value=9.8e-06)
          Length = 863

 Score = 26.6 bits (56), Expect = 7.7
 Identities = 14/53 (26%), Positives = 26/53 (49%)
 Frame = +3

Query: 93  GGGHTNIFDSEPEPPRTGRRAVPPSATSTFSHGQGDEPKANNGTSVATNGQST 251
           G GH N  D   +    GR   PPS++S+ S        +++ +S +++  S+
Sbjct: 550 GWGHLNFDDLRGDIRCLGRFVSPPSSSSSSSPPPASSSSSSSSSSSSSSSSSS 602


>SB_21364| Best HMM Match : Homeobox (HMM E-Value=0.27)
          Length = 118

 Score = 26.6 bits (56), Expect = 7.7
 Identities = 18/60 (30%), Positives = 29/60 (48%)
 Frame = +1

Query: 34  HSTLASMTELVYQAGCSAPPVVATLTSSIPSRSHRGPGAVPFHQAQRALSATDKEMSRKR 213
           H+T ASM + +Y+   +    +AT T     R +RG      H A  A  AT  +++ +R
Sbjct: 51  HATRASMADNIYKVSRATHTTMATNTKLEMRRRYRGHQEKVNH-ATHATVATKLKLTMRR 109


>SB_47749| Best HMM Match : Plasmodium_HRP (HMM E-Value=0.068)
          Length = 814

 Score = 26.6 bits (56), Expect = 7.7
 Identities = 13/30 (43%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
 Frame = +3

Query: 48  LNDGARLSS-RVLXPPGGGHTNIFDSEPEP 134
           ++DG  ++S RV     GGH NI DS   P
Sbjct: 204 ISDGMPITSVRVFARRSGGHDNILDSATSP 233


>SB_40655| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1074

 Score = 26.6 bits (56), Expect = 7.7
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = -2

Query: 347 APGPFGLDCRLWERALLQQVPPAGSVAPGSP 255
           +P   G   R+ +R+L QQ+PP    +PG P
Sbjct: 102 SPQTSGSTQRVKKRSLCQQLPPLIETSPGPP 132


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,756,799
Number of Sequences: 59808
Number of extensions: 248416
Number of successful extensions: 814
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 726
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 809
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 727815563
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)