Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10810X
         (405 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              25   0.33 
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    24   0.57 
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    24   0.57 
AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase pro...    21   4.0  

>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 25.0 bits (52), Expect = 0.33
 Identities = 12/32 (37%), Positives = 16/32 (50%)
 Frame = -3

Query: 133  GSGSESKMLVWPPPGGXSTLLDRRAPSLRPTL 38
            G GS+   +V+   G     LD+R P LR  L
Sbjct: 1612 GHGSDKDDVVYQQTGVGGATLDKRRPDLRDEL 1643


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 24.2 bits (50), Expect = 0.57
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = +1

Query: 76   GCSAPPVVATLTSSIPSR 129
            GC++PP  AT   S+ SR
Sbjct: 1750 GCASPPPAATSMKSVSSR 1767


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 24.2 bits (50), Expect = 0.57
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = +1

Query: 76   GCSAPPVVATLTSSIPSR 129
            GC++PP  AT   S+ SR
Sbjct: 1746 GCASPPPAATSMKSVSSR 1763


>AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase
           protein.
          Length = 580

 Score = 21.4 bits (43), Expect = 4.0
 Identities = 11/25 (44%), Positives = 13/25 (52%)
 Frame = +1

Query: 58  ELVYQAGCSAPPVVATLTSSIPSRS 132
           E V  AGC+A P    L S  P R+
Sbjct: 400 ETVDPAGCNAGPAKYYLKSRDPERT 424


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 110,374
Number of Sequences: 438
Number of extensions: 2406
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 10132494
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)