Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV10810X
(405 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g02970.1 68416.m00292 phosphate-responsive 1 family protein s... 31 0.29
At5g54290.1 68418.m06762 cytochrome c biogenesis protein family ... 30 0.68
At5g07570.1 68418.m00867 glycine/proline-rich protein contains s... 28 2.1
At1g79510.2 68414.m09269 expressed protein 28 2.1
At1g79510.1 68414.m09268 expressed protein 28 2.1
At1g78260.1 68414.m09120 RNA recognition motif (RRM)-containing ... 28 2.1
At5g43020.1 68418.m05248 leucine-rich repeat transmembrane prote... 27 3.6
At1g06070.1 68414.m00636 bZIP transcription factor, putative (bZ... 27 3.6
At5g58170.1 68418.m07281 glycerophosphoryl diester phosphodieste... 27 6.3
At5g58050.1 68418.m07265 glycerophosphoryl diester phosphodieste... 27 6.3
At4g34440.1 68417.m04894 protein kinase family protein contains ... 27 6.3
At1g22910.3 68414.m02863 RNA recognition motif (RRM)-containing ... 27 6.3
>At3g02970.1 68416.m00292 phosphate-responsive 1 family protein
similar to phi-1 (phosphate-induced gene) [Nicotiana
tabacum] GI:3759184; contains Pfam profile PF04674:
Phosphate-induced protein 1 conserved region
Length = 332
Score = 31.1 bits (67), Expect = 0.29
Identities = 20/59 (33%), Positives = 25/59 (42%), Gaps = 1/59 (1%)
Frame = +3
Query: 18 KMTSTPFNVGLNDGARLSSRVLXPPGGGHTNIFDSEPEPPRTGRRAVPPSATSTF-SHG 191
K +TP+N + SS + P T +F S P TGR V P F SHG
Sbjct: 251 KSETTPYNDDVKKNHESSSMYIVDPATKCTRVFGSGAFPGFTGRIRVDPITGGAFNSHG 309
>At5g54290.1 68418.m06762 cytochrome c biogenesis protein family low
similarity to cytochrome c biogenesis protein CcdA
[Paracoccus pantotrophus] GI:11095328; contains Pfam
profile PF02683: Cytochrome C biogenesis protein
transmembrane region
Length = 354
Score = 29.9 bits (64), Expect = 0.68
Identities = 15/31 (48%), Positives = 19/31 (61%), Gaps = 2/31 (6%)
Frame = -3
Query: 214 FAFGSSPC--PWLKVLVALGGTARRPVLGGS 128
FA +SPC P L L+ T+R PV+GGS
Sbjct: 260 FALAASPCSTPVLATLLGYVATSRDPVIGGS 290
>At5g07570.1 68418.m00867 glycine/proline-rich protein contains
similarity to flagelliform silk protein [Nephila
clavipes] gi|7106224|gb|AAF36090
Length = 1504
Score = 28.3 bits (60), Expect = 2.1
Identities = 12/22 (54%), Positives = 15/22 (68%)
Frame = -1
Query: 405 PEQSPPGVTLTRLGASALGCSG 340
P +PPGV L+ +GAS G SG
Sbjct: 1272 PGAAPPGVDLSNVGASDRGASG 1293
>At1g79510.2 68414.m09269 expressed protein
Length = 275
Score = 28.3 bits (60), Expect = 2.1
Identities = 15/50 (30%), Positives = 23/50 (46%), Gaps = 1/50 (2%)
Frame = +3
Query: 108 NIFDSEPEPPRTGRRA-VPPSATSTFSHGQGDEPKANNGTSVATNGQSTP 254
++F + PP G + PSA + HG D+ N G +V T + P
Sbjct: 51 SLFSVQAPPPVRGAQVKTKPSAQDKYQHGSKDDFYINLGLAVRTLREDLP 100
>At1g79510.1 68414.m09268 expressed protein
Length = 275
Score = 28.3 bits (60), Expect = 2.1
Identities = 15/50 (30%), Positives = 23/50 (46%), Gaps = 1/50 (2%)
Frame = +3
Query: 108 NIFDSEPEPPRTGRRA-VPPSATSTFSHGQGDEPKANNGTSVATNGQSTP 254
++F + PP G + PSA + HG D+ N G +V T + P
Sbjct: 51 SLFSVQAPPPVRGAQVKTKPSAQDKYQHGSKDDFYINLGLAVRTLREDLP 100
>At1g78260.1 68414.m09120 RNA recognition motif (RRM)-containing
protein similar to RNA recognition motif-containing
protein SEB-4 GI:8895698 from [Xenopus laevis]; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 287
Score = 28.3 bits (60), Expect = 2.1
Identities = 18/55 (32%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
Frame = +1
Query: 31 HHSTLASMTELVYQAGCS-APPVVATLTSSIPSRSHRGPGAVPFHQAQRALSATD 192
HH +S + LVY + S APP+ L+SS + S P VP + + +A +
Sbjct: 223 HHQRFSSPSFLVYPSNSSFAPPLQGVLSSS--TESEAVPQQVPAAEGEATTTAPE 275
>At5g43020.1 68418.m05248 leucine-rich repeat transmembrane protein
kinase, putative
Length = 669
Score = 27.5 bits (58), Expect = 3.6
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = -2
Query: 170 CAWWNGTAPGPRWLRLGIEDV 108
C WW T G R +RL IED+
Sbjct: 65 CQWWGVTCYGNRVVRLVIEDL 85
>At1g06070.1 68414.m00636 bZIP transcription factor, putative
(bZIP69) similar to transcriptional activator RF2a
GB:AF005492 GI:2253277 from [Oryza sativa]; contains
Pfam profile PF00170: bZIP transcription factor
Length = 423
Score = 27.5 bits (58), Expect = 3.6
Identities = 14/30 (46%), Positives = 17/30 (56%)
Frame = +3
Query: 165 SATSTFSHGQGDEPKANNGTSVATNGQSTP 254
SATST G+ EP N + +N QSTP
Sbjct: 125 SATSTSQMGEPSEPTWRNELASTSNLQSTP 154
>At5g58170.1 68418.m07281 glycerophosphoryl diester
phosphodiesterase family protein contains Pfam PF03009 :
Glycerophosphoryl diester phosphodiesterase family;
similar to Glycerophosphoryl diester phosphodiesterase
precursor (Glycerophosphodiester phosphodiesterase)
(Surface-exposed lipoprotein D) (Protein D)
(ImmunoglobulinD-binding protein) (IGD-binding protein)
(SP:Q06282) {Haemophilus influenzae}
Length = 750
Score = 26.6 bits (56), Expect = 6.3
Identities = 13/33 (39%), Positives = 19/33 (57%), Gaps = 3/33 (9%)
Frame = +3
Query: 159 PPSATST---FSHGQGDEPKANNGTSVATNGQS 248
PP+A+ + FSH G+ PKA + + NG S
Sbjct: 332 PPTASQSITCFSHQNGNLPKAGHALVITHNGAS 364
>At5g58050.1 68418.m07265 glycerophosphoryl diester
phosphodiesterase family protein contains Pfam PF03009 :
Glycerophosphoryl diester phosphodiesterase family;
similar to Glycerophosphoryl diester phosphodiesterase
precursor (Glycerophosphodiester phosphodiesterase)
(Surface-exposed lipoprotein D) (Protein D)
(ImmunoglobulinD-binding protein) (IGD-binding protein)
(SP:Q06282) {Haemophilus influenzae}
Length = 753
Score = 26.6 bits (56), Expect = 6.3
Identities = 13/33 (39%), Positives = 19/33 (57%), Gaps = 3/33 (9%)
Frame = +3
Query: 159 PPSATST---FSHGQGDEPKANNGTSVATNGQS 248
PP+A+ + FSH G+ PKA + + NG S
Sbjct: 332 PPTASQSITCFSHQNGNLPKAGHALVITHNGAS 364
>At4g34440.1 68417.m04894 protein kinase family protein contains
Pfam domain, PF00069: Protein kinase domain
Length = 670
Score = 26.6 bits (56), Expect = 6.3
Identities = 14/45 (31%), Positives = 19/45 (42%)
Frame = +3
Query: 87 PPGGGHTNIFDSEPEPPRTGRRAVPPSATSTFSHGQGDEPKANNG 221
P G T+ P PPR+ PP + G+ P+AN G
Sbjct: 147 PSSGNRTSGDGGSPSPPRS---ISPPQNSGDSDSSSGNHPQANIG 188
>At1g22910.3 68414.m02863 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM); similar to
GB:AAC33496
Length = 347
Score = 26.6 bits (56), Expect = 6.3
Identities = 22/67 (32%), Positives = 29/67 (43%), Gaps = 2/67 (2%)
Frame = +3
Query: 60 ARLSSRVLXPPGGGHTNIFDSEPEPPRTGRRAVPPSATS--TFSHGQGDEPKANNGTSVA 233
A S+ P GGGH + S+P+P + P S TFS QG + N S +
Sbjct: 188 AAASATPFYPCGGGHGGVQFSQPQPFYHHLSSYNPHHYSPPTFSMQQG----SRNRLSAS 243
Query: 234 TNGQSTP 254
T S P
Sbjct: 244 TTSYSLP 250
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,916,790
Number of Sequences: 28952
Number of extensions: 179938
Number of successful extensions: 599
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 559
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 598
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 595686720
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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