Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10808
         (620 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    23   2.4  
EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.      23   3.2  
EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.          22   4.2  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                21   7.3  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             21   7.3  

>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 23.0 bits (47), Expect = 2.4
 Identities = 16/66 (24%), Positives = 33/66 (50%)
 Frame = -2

Query: 502 EYSGLVIRVGGECLSLFSGDGSVTLDECGHDTSSSLNTEGKGCYIKQQQILHLLRLVTVQ 323
           E+ G+   +G   ++L SG+    LD  GH  ++ ++   +G +I    +L +     V+
Sbjct: 174 EFGGITQCIGAFDVTLESGERVTFLDTPGH--AAFISMRHRGAHITDIVVLVVAADDGVK 231

Query: 322 DSSLDS 305
           + +L S
Sbjct: 232 EQTLQS 237


>EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.
          Length = 686

 Score = 22.6 bits (46), Expect = 3.2
 Identities = 12/42 (28%), Positives = 22/42 (52%)
 Frame = -2

Query: 496 SGLVIRVGGECLSLFSGDGSVTLDECGHDTSSSLNTEGKGCY 371
           SG +I   G+ + +++ +G   L      +S S+NT+  G Y
Sbjct: 342 SGYLIDEYGKKIDIYTPEGLNMLGNVIEGSSDSINTKFYGMY 383


>EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.
          Length = 686

 Score = 22.2 bits (45), Expect = 4.2
 Identities = 12/42 (28%), Positives = 21/42 (50%)
 Frame = -2

Query: 496 SGLVIRVGGECLSLFSGDGSVTLDECGHDTSSSLNTEGKGCY 371
           SG +I   G+ + +++ +G   L       S S+NT+  G Y
Sbjct: 342 SGYLIDEYGKKIDIYTPEGLNMLGNVIEGNSDSINTKFYGMY 383


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 21.4 bits (43), Expect = 7.3
 Identities = 7/10 (70%), Positives = 8/10 (80%)
 Frame = -1

Query: 593 PRGAGGIPVS 564
           PRG GG+P S
Sbjct: 399 PRGPGGVPTS 408


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.4 bits (43), Expect = 7.3
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = +3

Query: 432  VTLPSPLNRLRHSPP 476
            +T PSP  R R++PP
Sbjct: 986  MTDPSPFKRGRYTPP 1000


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 172,854
Number of Sequences: 438
Number of extensions: 3719
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18460203
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)