Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10807X
         (401 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr 2||...   108   3e-25
SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pomb...    58   5e-10
SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex s...    57   9e-10
SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyce...    42   5e-05
SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy...    40   1e-04
SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit Arp42|Sc...    37   0.001
SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe...    36   0.002
SPCC1742.01 ||SPCC1795.13, SPCPB16A4.07c|sequence orphan|Schizos...    26   1.9  
SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit Arp9|Schizosa...    25   3.3  
SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces po...    25   5.8  
SPBC2A9.05c |||DUF846 family protein|Schizosaccharomyces pombe|c...    24   7.7  

>SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 375

 Score =  108 bits (260), Expect = 3e-25
 Identities = 46/49 (93%), Positives = 48/49 (97%)
 Frame = +3

Query: 255 GIGQKDSYVGDEAQSKRGILTLKYPIEHGIVTSWDDMEKIWHHTFYNEL 401
           G+GQKDSYVGDEAQSKRGILTLKYPIEHGIV +WDDMEKIWHHTFYNEL
Sbjct: 46  GMGQKDSYVGDEAQSKRGILTLKYPIEHGIVNNWDDMEKIWHHTFYNEL 94



 Score = 91.5 bits (217), Expect = 4e-20
 Identities = 39/44 (88%), Positives = 43/44 (97%)
 Frame = +1

Query: 124 DEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMV 255
           +EE+AALV+DNGSGMCKAGFAGDDAPRAVFPSIVGRPRH G+MV
Sbjct: 2   EEEIAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHHGIMV 45


>SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 379

 Score = 58.0 bits (134), Expect = 5e-10
 Identities = 22/45 (48%), Positives = 34/45 (75%)
 Frame = +3

Query: 264 QKDSYVGDEAQSKRGILTLKYPIEHGIVTSWDDMEKIWHHTFYNE 398
           QKD +VG EAQ+ RG+L ++ PIE GI+ +W DME+IW + + ++
Sbjct: 53  QKDMFVGSEAQNLRGLLKIQRPIERGIIQNWSDMEEIWSYIYSDQ 97



 Score = 55.2 bits (127), Expect = 4e-09
 Identities = 22/37 (59%), Positives = 29/37 (78%)
 Frame = +1

Query: 142 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVM 252
           + +DNGSG  KAGFAGDD P+ +FP+ VGR +H+ VM
Sbjct: 12  ICIDNGSGFIKAGFAGDDIPKCLFPTCVGRIKHERVM 48


>SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex
           subunit Arp2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 390

 Score = 57.2 bits (132), Expect = 9e-10
 Identities = 21/52 (40%), Positives = 38/52 (73%)
 Frame = +3

Query: 246 RDGGIGQKDSYVGDEAQSKRGILTLKYPIEHGIVTSWDDMEKIWHHTFYNEL 401
           + G +  KD  VGDEA++ R +L +KYP+E+GI+  +++M ++W +TF+ +L
Sbjct: 43  KTGNVQIKDVMVGDEAEAVRSLLQVKYPMENGIIRDFEEMNQLWDYTFFEKL 94



 Score = 48.0 bits (109), Expect = 5e-07
 Identities = 21/35 (60%), Positives = 26/35 (74%)
 Frame = +1

Query: 130 EVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRP 234
           E A +V+DNG+G  K G+A D+ PR  FPSIVGRP
Sbjct: 2   ESAPIVLDNGTGFVKVGYAKDNFPRFQFPSIVGRP 36


>SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 427

 Score = 41.5 bits (93), Expect = 5e-05
 Identities = 16/45 (35%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
 Frame = +3

Query: 270 DSYVGDEAQSKRGI-LTLKYPIEHGIVTSWDDMEKIWHHTFYNEL 401
           D ++G++A  K     +L YPI HG + +WD ME+ W  + +  L
Sbjct: 73  DFFIGNDALKKASAGYSLDYPIRHGQIENWDHMERFWQQSLFKYL 117



 Score = 40.7 bits (91), Expect = 8e-05
 Identities = 14/28 (50%), Positives = 23/28 (82%)
 Frame = +1

Query: 142 LVVDNGSGMCKAGFAGDDAPRAVFPSIV 225
           +++DNG+G  K G+AG+DAP  VFP+++
Sbjct: 8   IIMDNGTGYSKLGYAGNDAPSYVFPTVI 35


>SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 433

 Score = 40.3 bits (90), Expect = 1e-04
 Identities = 16/34 (47%), Positives = 24/34 (70%)
 Frame = +1

Query: 127 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVG 228
           +EV+A+V+D GS   + GF+G+D P+ V PS  G
Sbjct: 9   DEVSAIVIDPGSKWTRIGFSGEDIPKCVLPSYCG 42


>SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit
           Arp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 430

 Score = 36.7 bits (81), Expect = 0.001
 Identities = 14/34 (41%), Positives = 23/34 (67%)
 Frame = +1

Query: 127 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVG 228
           EE+ +LV+D GS   + G+AG+++P  + PS  G
Sbjct: 8   EEIPSLVIDPGSCWTRFGYAGEESPMTILPSYYG 41


>SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 721

 Score = 35.9 bits (79), Expect = 0.002
 Identities = 15/32 (46%), Positives = 22/32 (68%)
 Frame = +1

Query: 142 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPR 237
           LV+DNGS   +AG+ G+  P+ VF ++V R R
Sbjct: 27  LVIDNGSWQLRAGWGGEKDPKLVFDNLVSRYR 58



 Score = 31.1 bits (67), Expect = 0.067
 Identities = 13/49 (26%), Positives = 29/49 (59%), Gaps = 1/49 (2%)
 Frame = +3

Query: 246 RDGGIGQKDSYVGDEAQSKRGILTL-KYPIEHGIVTSWDDMEKIWHHTF 389
           RD  + +  + VG++   + G  ++ + P E  ++++WD ME++  +TF
Sbjct: 58  RDRKLSRTSTLVGNDTLIEVGSRSIARSPFERNVISNWDLMEQVLDYTF 106


>SPCC1742.01 ||SPCC1795.13, SPCPB16A4.07c|sequence
           orphan|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1563

 Score = 26.2 bits (55), Expect = 1.9
 Identities = 14/45 (31%), Positives = 19/45 (42%), Gaps = 1/45 (2%)
 Frame = -1

Query: 260 YTTITP*WRGLPTIEGNTARGASSPAKPALHIPEP-LSTTNAATS 129
           YTTIT  W G  T+        S      ++I  P +S T   T+
Sbjct: 711 YTTITTGWTGSTTLTSIVTHSGSETGPTTVYIETPSVSATTTTTT 755


>SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit
           Arp9|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 523

 Score = 25.4 bits (53), Expect = 3.3
 Identities = 7/21 (33%), Positives = 12/21 (57%)
 Frame = +3

Query: 327 PIEHGIVTSWDDMEKIWHHTF 389
           PI+ G V  W+ ++  W H +
Sbjct: 113 PIQRGRVVDWEALKAFWKHLY 133


>SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 401

 Score = 24.6 bits (51), Expect = 5.8
 Identities = 10/16 (62%), Positives = 13/16 (81%)
 Frame = +1

Query: 142 LVVDNGSGMCKAGFAG 189
           +V+DNG+   KAGFAG
Sbjct: 8   IVLDNGAYHIKAGFAG 23


>SPBC2A9.05c |||DUF846 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 219

 Score = 24.2 bits (50), Expect = 7.7
 Identities = 12/24 (50%), Positives = 14/24 (58%)
 Frame = -3

Query: 174 LAHTGAIVYYQRGNFFVAHLELVF 103
           L  TGAIV Y  G FF +   L+F
Sbjct: 56  LFRTGAIVAYILGMFFTSSFMLLF 79


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,713,531
Number of Sequences: 5004
Number of extensions: 33878
Number of successful extensions: 102
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 83
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 102
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 136158338
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)