Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV10807X
(401 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_23733| Best HMM Match : No HMM Matches (HMM E-Value=.) 110 4e-25
SB_7190| Best HMM Match : No HMM Matches (HMM E-Value=.) 110 4e-25
SB_56| Best HMM Match : Actin (HMM E-Value=0) 110 4e-25
SB_56628| Best HMM Match : Actin (HMM E-Value=0) 110 4e-25
SB_7187| Best HMM Match : No HMM Matches (HMM E-Value=.) 110 4e-25
SB_23734| Best HMM Match : No HMM Matches (HMM E-Value=.) 93 6e-20
SB_34957| Best HMM Match : PARP (HMM E-Value=4.4e-12) 60 9e-10
SB_54| Best HMM Match : Actin (HMM E-Value=0) 60 9e-10
SB_19204| Best HMM Match : No HMM Matches (HMM E-Value=.) 56 8e-09
SB_49385| Best HMM Match : Actin (HMM E-Value=0.00022) 49 2e-06
SB_43920| Best HMM Match : SRP-alpha_N (HMM E-Value=4.6) 45 3e-05
SB_13343| Best HMM Match : No HMM Matches (HMM E-Value=.) 43 1e-04
SB_3433| Best HMM Match : Actin (HMM E-Value=0.00011) 32 0.15
SB_37540| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.27
SB_5400| Best HMM Match : DUF1153 (HMM E-Value=7.8) 31 0.27
SB_35780| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 0.61
SB_8955| Best HMM Match : TPR_1 (HMM E-Value=0.00014) 29 1.9
SB_38782| Best HMM Match : PAN (HMM E-Value=2.3e-05) 28 2.5
SB_20462| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 2.5
SB_11603| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 2.5
SB_22432| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 4.3
SB_57561| Best HMM Match : fn3 (HMM E-Value=0) 27 5.7
SB_28400| Best HMM Match : PMSR (HMM E-Value=1.7e-24) 27 5.7
SB_31934| Best HMM Match : C1_3 (HMM E-Value=3.5) 27 5.7
SB_20976| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.7
SB_14615| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.6
SB_10917| Best HMM Match : SPRY (HMM E-Value=1.4e-17) 27 7.6
SB_35722| Best HMM Match : CutA1 (HMM E-Value=8.3) 27 7.6
SB_23302| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.6
SB_21813| Best HMM Match : CutA1 (HMM E-Value=8.3) 27 7.6
SB_12742| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.6
SB_34833| Best HMM Match : E6 (HMM E-Value=7.2) 26 10.0
SB_26308| Best HMM Match : Drf_FH1 (HMM E-Value=1.6) 26 10.0
>SB_23733| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 376
Score = 110 bits (265), Expect = 4e-25
Identities = 47/49 (95%), Positives = 49/49 (100%)
Frame = +3
Query: 255 GIGQKDSYVGDEAQSKRGILTLKYPIEHGIVTSWDDMEKIWHHTFYNEL 401
G+GQKDSYVGDEAQSKRGILTLKYPIEHGIVT+WDDMEKIWHHTFYNEL
Sbjct: 47 GMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNEL 95
Score = 95.1 bits (226), Expect = 2e-20
Identities = 43/46 (93%), Positives = 45/46 (97%)
Frame = +1
Query: 118 MCDEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMV 255
M D+E+AALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMV
Sbjct: 1 MEDDEIAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMV 46
>SB_7190| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 375
Score = 110 bits (265), Expect = 4e-25
Identities = 47/49 (95%), Positives = 49/49 (100%)
Frame = +3
Query: 255 GIGQKDSYVGDEAQSKRGILTLKYPIEHGIVTSWDDMEKIWHHTFYNEL 401
G+GQKDSYVGDEAQSKRGILTLKYPIEHGIVT+WDDMEKIWHHTFYNEL
Sbjct: 46 GMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNEL 94
Score = 92.3 bits (219), Expect = 1e-19
Identities = 41/44 (93%), Positives = 44/44 (100%)
Frame = +1
Query: 124 DEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMV 255
+++VAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMV
Sbjct: 2 EDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMV 45
>SB_56| Best HMM Match : Actin (HMM E-Value=0)
Length = 375
Score = 110 bits (265), Expect = 4e-25
Identities = 47/49 (95%), Positives = 49/49 (100%)
Frame = +3
Query: 255 GIGQKDSYVGDEAQSKRGILTLKYPIEHGIVTSWDDMEKIWHHTFYNEL 401
G+GQKDSYVGDEAQSKRGILTLKYPIEHGIVT+WDDMEKIWHHTFYNEL
Sbjct: 46 GMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNEL 94
Score = 93.5 bits (222), Expect = 6e-20
Identities = 42/44 (95%), Positives = 44/44 (100%)
Frame = +1
Query: 124 DEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMV 255
++EVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMV
Sbjct: 2 EDEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMV 45
>SB_56628| Best HMM Match : Actin (HMM E-Value=0)
Length = 376
Score = 110 bits (265), Expect = 4e-25
Identities = 47/49 (95%), Positives = 49/49 (100%)
Frame = +3
Query: 255 GIGQKDSYVGDEAQSKRGILTLKYPIEHGIVTSWDDMEKIWHHTFYNEL 401
G+GQKDSYVGDEAQSKRGILTLKYPIEHGIVT+WDDMEKIWHHTFYNEL
Sbjct: 47 GMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNEL 95
Score = 99.5 bits (237), Expect = 9e-22
Identities = 44/46 (95%), Positives = 46/46 (100%)
Frame = +1
Query: 118 MCDEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMV 255
MCD++VAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMV
Sbjct: 1 MCDDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMV 46
>SB_7187| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 349
Score = 110 bits (265), Expect = 4e-25
Identities = 47/49 (95%), Positives = 49/49 (100%)
Frame = +3
Query: 255 GIGQKDSYVGDEAQSKRGILTLKYPIEHGIVTSWDDMEKIWHHTFYNEL 401
G+GQKDSYVGDEAQSKRGILTLKYPIEHGIVT+WDDMEKIWHHTFYNEL
Sbjct: 47 GMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNEL 95
Score = 95.1 bits (226), Expect = 2e-20
Identities = 41/46 (89%), Positives = 45/46 (97%)
Frame = +1
Query: 118 MCDEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMV 255
M D+++AALV+DNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMV
Sbjct: 1 MADDDIAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMV 46
>SB_23734| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 338
Score = 93.5 bits (222), Expect = 6e-20
Identities = 41/44 (93%), Positives = 44/44 (100%)
Frame = +1
Query: 124 DEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMV 255
D++VAALV+DNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMV
Sbjct: 2 DDDVAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMV 45
Score = 90.2 bits (214), Expect = 5e-19
Identities = 40/45 (88%), Positives = 42/45 (93%)
Frame = +3
Query: 255 GIGQKDSYVGDEAQSKRGILTLKYPIEHGIVTSWDDMEKIWHHTF 389
G+GQKDSYVGDEAQSKRGILTLKYPIEHGIVT+WDDMEKI TF
Sbjct: 46 GMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIMFETF 90
>SB_34957| Best HMM Match : PARP (HMM E-Value=4.4e-12)
Length = 1392
Score = 59.7 bits (138), Expect = 9e-10
Identities = 27/39 (69%), Positives = 29/39 (74%)
Frame = +1
Query: 127 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQ 243
E LV+D GS M K GFAGDDAP+ VFP IVGRPRHQ
Sbjct: 1354 EAPTPLVIDVGSHMWKVGFAGDDAPKGVFPPIVGRPRHQ 1392
>SB_54| Best HMM Match : Actin (HMM E-Value=0)
Length = 2486
Score = 59.7 bits (138), Expect = 9e-10
Identities = 23/34 (67%), Positives = 30/34 (88%)
Frame = +1
Query: 142 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQ 243
+V+DNGSG CKAG + D++PR VFP+IVGRPRH+
Sbjct: 2097 VVIDNGSGFCKAGLSTDESPRVVFPAIVGRPRHK 2130
>SB_19204| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 411
Score = 56.4 bits (130), Expect = 8e-09
Identities = 24/50 (48%), Positives = 34/50 (68%)
Frame = +3
Query: 240 SGRDGGIGQKDSYVGDEAQSKRGILTLKYPIEHGIVTSWDDMEKIWHHTF 389
S + G I KD VGDEA R +L + YP+++GIV +WDDM+ +W +TF
Sbjct: 44 SQKVGDIEVKDLMVGDEASQLRYMLEVNYPMDNGIVRNWDDMKHVWDYTF 93
Score = 44.4 bits (100), Expect = 4e-05
Identities = 17/33 (51%), Positives = 24/33 (72%)
Frame = +1
Query: 136 AALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRP 234
+ +V DNG+G K G+AG + P +FPS+VGRP
Sbjct: 7 SVIVCDNGTGFVKCGYAGSNFPAHIFPSMVGRP 39
>SB_49385| Best HMM Match : Actin (HMM E-Value=0.00022)
Length = 921
Score = 48.8 bits (111), Expect = 2e-06
Identities = 20/48 (41%), Positives = 31/48 (64%)
Frame = +1
Query: 112 FKMCDEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMV 255
FK+ A+V+DNG G+ K GFAGD PR + P++VG P+ +++
Sbjct: 693 FKLDSHYNRAIVLDNGCGISKIGFAGDRVPRIIQPAVVGNPQRFSMLI 740
>SB_43920| Best HMM Match : SRP-alpha_N (HMM E-Value=4.6)
Length = 372
Score = 44.8 bits (101), Expect = 3e-05
Identities = 20/49 (40%), Positives = 26/49 (53%)
Frame = +3
Query: 255 GIGQKDSYVGDEAQSKRGILTLKYPIEHGIVTSWDDMEKIWHHTFYNEL 401
G+ D ++GDEA K T K+PI H IV WD ME+ W + L
Sbjct: 278 GVEDLDFFIGDEAIDKPSYAT-KWPIRHAIVEDWDLMERFWEQCIFKYL 325
>SB_13343| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 198
Score = 42.7 bits (96), Expect = 1e-04
Identities = 21/39 (53%), Positives = 28/39 (71%)
Frame = -3
Query: 240 MAGPSNDRGEHGARSIISCETGLAHTGAIVYYQRGNFFV 124
MA ++D GE+G+ SI+S ETGLAHTGAI+ Q + V
Sbjct: 1 MARSADDGGENGSGSIVSGETGLAHTGAIIDNQSCDIIV 39
>SB_3433| Best HMM Match : Actin (HMM E-Value=0.00011)
Length = 580
Score = 32.3 bits (70), Expect = 0.15
Identities = 13/43 (30%), Positives = 24/43 (55%), Gaps = 2/43 (4%)
Frame = +3
Query: 276 YVGDEAQSKRGILTLKY--PIEHGIVTSWDDMEKIWHHTFYNE 398
++GD+ + + L Y P + G + +WD ++IW +TF E
Sbjct: 273 FIGDQIEECKDYSALFYVLPFQKGFLVNWDVEKQIWDYTFGKE 315
Score = 27.9 bits (59), Expect = 3.3
Identities = 12/27 (44%), Positives = 19/27 (70%)
Frame = +1
Query: 130 EVAALVVDNGSGMCKAGFAGDDAPRAV 210
++A LV+D G+ K GFA + APR++
Sbjct: 232 KMATLVLDCGACSQKIGFASNQAPRSI 258
>SB_37540| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 120
Score = 31.5 bits (68), Expect = 0.27
Identities = 14/24 (58%), Positives = 16/24 (66%)
Frame = -1
Query: 215 GNTARGASSPAKPALHIPEPLSTT 144
GNT R PAKPAL++P P S T
Sbjct: 80 GNTNRRTRIPAKPALNLPSPPSKT 103
>SB_5400| Best HMM Match : DUF1153 (HMM E-Value=7.8)
Length = 170
Score = 31.5 bits (68), Expect = 0.27
Identities = 14/24 (58%), Positives = 16/24 (66%)
Frame = -1
Query: 215 GNTARGASSPAKPALHIPEPLSTT 144
GNT R PAKPAL++P P S T
Sbjct: 80 GNTNRRTRIPAKPALNLPSPPSKT 103
>SB_35780| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 749
Score = 30.3 bits (65), Expect = 0.61
Identities = 13/24 (54%), Positives = 16/24 (66%)
Frame = -1
Query: 215 GNTARGASSPAKPALHIPEPLSTT 144
GNT R PAKP+L++P P S T
Sbjct: 540 GNTNRRTRIPAKPSLNLPSPPSKT 563
>SB_8955| Best HMM Match : TPR_1 (HMM E-Value=0.00014)
Length = 411
Score = 28.7 bits (61), Expect = 1.9
Identities = 17/44 (38%), Positives = 25/44 (56%)
Frame = -1
Query: 374 NLLHVIPASDDSVFDGVFEGQDTSFALCLISYIRVLLSYTTITP 243
NL +PAS+ + D V + D++F L ISY RVL + + P
Sbjct: 279 NLASSMPASECNYLDYV-KATDSTFQLHKISYTRVLELFQNLDP 321
>SB_38782| Best HMM Match : PAN (HMM E-Value=2.3e-05)
Length = 596
Score = 28.3 bits (60), Expect = 2.5
Identities = 16/38 (42%), Positives = 21/38 (55%)
Frame = -2
Query: 313 RIPLLLCASSPT*ESFCPIPPSRPDGGAFQRSRGTRRE 200
R+ ++LCA + SF RPDGG Q GT+RE
Sbjct: 538 RLCMVLCARTSACVSF----NHRPDGGICQLKNGTKRE 571
>SB_20462| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 130
Score = 28.3 bits (60), Expect = 2.5
Identities = 13/24 (54%), Positives = 15/24 (62%)
Frame = -1
Query: 215 GNTARGASSPAKPALHIPEPLSTT 144
GNT R AKPAL++P P S T
Sbjct: 40 GNTNRRTRIQAKPALNLPSPPSKT 63
>SB_11603| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 635
Score = 28.3 bits (60), Expect = 2.5
Identities = 13/24 (54%), Positives = 14/24 (58%)
Frame = -1
Query: 215 GNTARGASSPAKPALHIPEPLSTT 144
GNT R PAKP L IP P + T
Sbjct: 68 GNTNRRTRIPAKPTLTIPSPPTKT 91
>SB_22432| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 285
Score = 27.5 bits (58), Expect = 4.3
Identities = 12/37 (32%), Positives = 21/37 (56%)
Frame = -1
Query: 230 LPTIEGNTARGASSPAKPALHIPEPLSTTNAATSSSH 120
L IE + A++P P + +P+ + +AAT +SH
Sbjct: 222 LRRIERSNIPQATAPGTPGVPVPQAVHGVSAATQASH 258
>SB_57561| Best HMM Match : fn3 (HMM E-Value=0)
Length = 1614
Score = 27.1 bits (57), Expect = 5.7
Identities = 13/36 (36%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
Frame = -3
Query: 249 HALMAGPSN--DRGEHGARSIISCETGLAHTGAIVY 148
++L+A P N G H + S+ +C T +A G VY
Sbjct: 319 YSLIATPLNGTSAGAHNSISVFTCNTSVAIAGLAVY 354
>SB_28400| Best HMM Match : PMSR (HMM E-Value=1.7e-24)
Length = 766
Score = 27.1 bits (57), Expect = 5.7
Identities = 12/35 (34%), Positives = 22/35 (62%)
Frame = +1
Query: 136 AALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRH 240
+ +++D GS KAGFA ++A + + S++G H
Sbjct: 483 SVIIIDLGSSSVKAGFAQEEA-QVFYISLIGILEH 516
>SB_31934| Best HMM Match : C1_3 (HMM E-Value=3.5)
Length = 121
Score = 27.1 bits (57), Expect = 5.7
Identities = 13/40 (32%), Positives = 18/40 (45%), Gaps = 1/40 (2%)
Frame = -2
Query: 259 IPP-SRPDGGAFQRSRGTRREEHHLLRNRPCTYRSHCLLP 143
+PP S P GA + SRG H + C + C+ P
Sbjct: 35 LPPISNPKAGAMKSSRGCGPRPHPAFKCFDCNFVKSCVRP 74
>SB_20976| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 157
Score = 27.1 bits (57), Expect = 5.7
Identities = 13/40 (32%), Positives = 18/40 (45%), Gaps = 1/40 (2%)
Frame = -2
Query: 259 IPP-SRPDGGAFQRSRGTRREEHHLLRNRPCTYRSHCLLP 143
+PP S P GA + SRG H + C + C+ P
Sbjct: 71 LPPISNPKAGAMKSSRGCGPRPHPAFKCFDCNFVKSCVRP 110
>SB_14615| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 185
Score = 26.6 bits (56), Expect = 7.6
Identities = 20/53 (37%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
Frame = -1
Query: 281 YIRVLLSYTTITP*WRGLPTIEGNTARGASSP-AKPALHIPEPLSTTNAATSS 126
Y RVL Y W +G T R SS A+P L++P P S T ++ SS
Sbjct: 62 YNRVLNQYLK----WLQQVKDDGGTNRTRSSASAEPTLNLPSPPSKTPSSASS 110
>SB_10917| Best HMM Match : SPRY (HMM E-Value=1.4e-17)
Length = 635
Score = 26.6 bits (56), Expect = 7.6
Identities = 13/36 (36%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
Frame = +3
Query: 294 QSKRGILTLKYPIEHGIVTSW--DDMEKIWHHTFYN 395
+ K ++TL + I G+ S D EK+W+HT N
Sbjct: 465 RKKAPLITLSHVIRMGLALSLVSDVKEKVWYHTCPN 500
>SB_35722| Best HMM Match : CutA1 (HMM E-Value=8.3)
Length = 171
Score = 26.6 bits (56), Expect = 7.6
Identities = 20/53 (37%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
Frame = -1
Query: 281 YIRVLLSYTTITP*WRGLPTIEGNTARGASSP-AKPALHIPEPLSTTNAATSS 126
Y RVL Y W +G T R SS A+P L++P P S T ++ SS
Sbjct: 62 YNRVLNQYLK----WLQQVKDDGGTNRTRSSASAEPTLNLPSPPSKTPSSASS 110
>SB_23302| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 653
Score = 26.6 bits (56), Expect = 7.6
Identities = 14/51 (27%), Positives = 23/51 (45%), Gaps = 1/51 (1%)
Frame = -3
Query: 303 FCSVPHLLHKSPSVLYHHHALMAGPSN-DRGEHGARSIISCETGLAHTGAI 154
F + + H SP+VLY H D G H A+++ + +A A+
Sbjct: 593 FVTTTRVTHASPAVLYAHSPDRDWSGRIDHGHHAAKAVRALTDAIAMAEAV 643
>SB_21813| Best HMM Match : CutA1 (HMM E-Value=8.3)
Length = 200
Score = 26.6 bits (56), Expect = 7.6
Identities = 20/53 (37%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
Frame = -1
Query: 281 YIRVLLSYTTITP*WRGLPTIEGNTARGASSP-AKPALHIPEPLSTTNAATSS 126
Y RVL Y W +G T R SS A+P L++P P S T ++ SS
Sbjct: 62 YNRVLNQYLK----WLQQVKDDGGTNRTRSSASAEPTLNLPSPPSKTPSSASS 110
>SB_12742| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1077
Score = 26.6 bits (56), Expect = 7.6
Identities = 10/27 (37%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
Frame = +1
Query: 115 KMCDEEVAALVVDNG-SGMCKAGFAGD 192
++CD++ + +N MCKAG+ GD
Sbjct: 487 RLCDKDAVCRLENNAIKCMCKAGYTGD 513
>SB_34833| Best HMM Match : E6 (HMM E-Value=7.2)
Length = 135
Score = 26.2 bits (55), Expect = 10.0
Identities = 11/16 (68%), Positives = 11/16 (68%)
Frame = -2
Query: 190 LLRNRPCTYRSHCLLP 143
L R R C YRSH LLP
Sbjct: 52 LFRGRYCQYRSHNLLP 67
>SB_26308| Best HMM Match : Drf_FH1 (HMM E-Value=1.6)
Length = 184
Score = 26.2 bits (55), Expect = 10.0
Identities = 15/42 (35%), Positives = 20/42 (47%), Gaps = 4/42 (9%)
Frame = -1
Query: 236 RGLPTIE----GNTARGASSPAKPALHIPEPLSTTNAATSSS 123
RG P I NT+RG PA P + PL+ +S+S
Sbjct: 119 RGTPPIREDGYANTSRGDRGPASPHSFLSSPLNLRKQPSSAS 160
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,816,803
Number of Sequences: 59808
Number of extensions: 296632
Number of successful extensions: 825
Number of sequences better than 10.0: 33
Number of HSP's better than 10.0 without gapping: 728
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 824
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 715479706
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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