Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10807X
         (401 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB073998-1|BAC76402.1|  339|Apis mellifera preprotachykinin prot...    23   1.3  
AB073995-1|BAC76399.1|  301|Apis mellifera preprotachykinin prot...    23   1.3  
AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    22   2.3  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    22   2.3  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    21   4.0  
AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.             21   4.0  
AB013288-1|BAA87894.1|  149|Apis mellifera protein kinase C prot...    21   4.0  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    21   5.3  
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    20   9.2  

>AB073998-1|BAC76402.1|  339|Apis mellifera preprotachykinin
           protein.
          Length = 339

 Score = 23.0 bits (47), Expect = 1.3
 Identities = 15/50 (30%), Positives = 23/50 (46%), Gaps = 1/50 (2%)
 Frame = +3

Query: 216 LDRW-KAPPSGRDGGIGQKDSYVGDEAQSKRGILTLKYPIEHGIVTSWDD 362
           L  W K  P G  G  G+K      E   KRG++  +  ++    T++DD
Sbjct: 175 LGEWEKRAPMGFYGTRGKKIILDALEELDKRGVMDFQIGLQRKKDTTFDD 224


>AB073995-1|BAC76399.1|  301|Apis mellifera preprotachykinin
           protein.
          Length = 301

 Score = 23.0 bits (47), Expect = 1.3
 Identities = 15/50 (30%), Positives = 23/50 (46%), Gaps = 1/50 (2%)
 Frame = +3

Query: 216 LDRW-KAPPSGRDGGIGQKDSYVGDEAQSKRGILTLKYPIEHGIVTSWDD 362
           L  W K  P G  G  G+K      E   KRG++  +  ++    T++DD
Sbjct: 175 LGEWEKRAPMGFYGTRGKKIILDALEELDKRGVMDFQIGLQRKKDTTFDD 224


>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 22.2 bits (45), Expect = 2.3
 Identities = 10/26 (38%), Positives = 12/26 (46%)
 Frame = -3

Query: 93  VLL*INKLTCYCTASLLLYNATTPAC 16
           ++L    L CY    LLL   TT  C
Sbjct: 555 IILLAGVLVCYLNTFLLLATPTTVTC 580


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 22.2 bits (45), Expect = 2.3
 Identities = 10/26 (38%), Positives = 12/26 (46%)
 Frame = -3

Query: 93  VLL*INKLTCYCTASLLLYNATTPAC 16
           ++L    L CY    LLL   TT  C
Sbjct: 645 IILLAGVLVCYLNTFLLLATPTTVTC 670


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 21.4 bits (43), Expect = 4.0
 Identities = 8/20 (40%), Positives = 11/20 (55%)
 Frame = -3

Query: 228 SNDRGEHGARSIISCETGLA 169
           + D GEH   ++   E GLA
Sbjct: 128 ATDPGEHNGDTVTDVEAGLA 147


>AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.
          Length = 289

 Score = 21.4 bits (43), Expect = 4.0
 Identities = 8/20 (40%), Positives = 11/20 (55%)
 Frame = -3

Query: 228 SNDRGEHGARSIISCETGLA 169
           + D GEH   ++   E GLA
Sbjct: 123 ATDPGEHNGDTVTDVEAGLA 142


>AB013288-1|BAA87894.1|  149|Apis mellifera protein kinase C
           protein.
          Length = 149

 Score = 21.4 bits (43), Expect = 4.0
 Identities = 7/10 (70%), Positives = 8/10 (80%)
 Frame = +1

Query: 163 GMCKAGFAGD 192
           GMCK G +GD
Sbjct: 130 GMCKEGISGD 139


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 21.0 bits (42), Expect = 5.3
 Identities = 11/40 (27%), Positives = 17/40 (42%)
 Frame = -3

Query: 282 LHKSPSVLYHHHALMAGPSNDRGEHGARSIISCETGLAHT 163
           +H +P   +HHH+  A P +      A S       + HT
Sbjct: 426 IHATP---HHHHSHAATPHHQHSTPLAHSSYPAAIQIGHT 462


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 20.2 bits (40), Expect = 9.2
 Identities = 7/20 (35%), Positives = 13/20 (65%)
 Frame = -3

Query: 162 GAIVYYQRGNFFVAHLELVF 103
           G +VY   G+F++  L ++F
Sbjct: 246 GYVVYSALGSFYIPMLVMLF 265


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 118,538
Number of Sequences: 438
Number of extensions: 2559
Number of successful extensions: 9
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 10008927
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)