Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10805
         (620 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16G5.14c |rps3||40S ribosomal protein S3|Schizosaccharomyces...   150   2e-37
SPBC1604.07 |atp4||F0-ATPase subunit|Schizosaccharomyces pombe|c...    28   1.3  
SPAC1834.04 |hht1||histone H3 h3.1|Schizosaccharomyces pombe|chr...    27   1.7  
SPBC8D2.04 |hht2|h3.2|histone H3 h3.2|Schizosaccharomyces pombe|...    27   1.7  
SPBC1105.11c |hht3|h3.3|histone H3 h3.3|Schizosaccharomyces pomb...    27   1.7  
SPBC646.03 |||glutamyl-tRNA amidotransferase|Schizosaccharomyces...    25   6.7  
SPBPB2B2.12c |||UDP-glucose 4-epimerase|Schizosaccharomyces pomb...    25   8.8  

>SPBC16G5.14c |rps3||40S ribosomal protein S3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 249

 Score =  150 bits (363), Expect = 2e-37
 Identities = 75/122 (61%), Positives = 87/122 (71%)
 Frame = +3

Query: 255 ELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIMESGARGCEVVVSGKLRG 434
           ELYAEKV  RGLCA+AQ ESLRYKL+ GLAVRRA YGVLR++ME+GA+GCEVV+SGKLR 
Sbjct: 87  ELYAEKVQNRGLCAVAQCESLRYKLLAGLAVRRAAYGVLRYVMEAGAKGCEVVISGKLRA 146

Query: 435 QRAKSMKFVDGLMIHSGDPCNDYVKLLPDMCFSDKEY*AIKVKIMLPWDQQGKNGPKKPQ 614
            RAKSMKF DG MIHSG P  D++          +    +KVKIMLP   + K   KK  
Sbjct: 147 ARAKSMKFADGFMIHSGQPAVDFIDSATRHVLLRQGVLGVKVKIMLP---EPKTRQKKSL 203

Query: 615 PD 620
           PD
Sbjct: 204 PD 205



 Score =  128 bits (309), Expect = 6e-31
 Identities = 64/84 (76%), Positives = 69/84 (82%)
 Frame = +1

Query: 4   AVNNISKKRKFVGDGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLG 183
           A   ISKKRKFV DGVF AELNEF TREL+E+GYSG EVRVTP RSEIII AT TQ VLG
Sbjct: 3   AAFTISKKRKFVADGVFYAELNEFFTRELSEEGYSGCEVRVTPSRSEIIIRATHTQDVLG 62

Query: 184 EKGRRIRELTSVVQKRFNIPEQSV 255
           EKGRRIRELT++VQKRF   E +V
Sbjct: 63  EKGRRIRELTALVQKRFKFAENTV 86


>SPBC1604.07 |atp4||F0-ATPase subunit|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 244

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 6/52 (11%)
 Frame = +2

Query: 80  LGSWPRTATPAWKCGSLPSARRSLLWP------PGHRVCSERKDAESVSSLP 217
           L S+P     AW+   LPS R+  L P      P  R+  ++K A  +SS+P
Sbjct: 8   LRSFPSVQRTAWQRLVLPSTRKFSLTPTTFDKTPSGRIPPDQKAANIISSVP 59


>SPAC1834.04 |hht1||histone H3 h3.1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 136

 Score = 27.5 bits (58), Expect = 1.7
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = +2

Query: 272 GGYSWPLRYRPGRISKIQAYRRSRCTSCLLWCSPF 376
           GG   P RYRPG ++  +  R  + T  L+   PF
Sbjct: 34  GGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPF 68


>SPBC8D2.04 |hht2|h3.2|histone H3 h3.2|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 136

 Score = 27.5 bits (58), Expect = 1.7
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = +2

Query: 272 GGYSWPLRYRPGRISKIQAYRRSRCTSCLLWCSPF 376
           GG   P RYRPG ++  +  R  + T  L+   PF
Sbjct: 34  GGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPF 68


>SPBC1105.11c |hht3|h3.3|histone H3 h3.3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 136

 Score = 27.5 bits (58), Expect = 1.7
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = +2

Query: 272 GGYSWPLRYRPGRISKIQAYRRSRCTSCLLWCSPF 376
           GG   P RYRPG ++  +  R  + T  L+   PF
Sbjct: 34  GGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPF 68


>SPBC646.03 |||glutamyl-tRNA amidotransferase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 471

 Score = 25.4 bits (53), Expect = 6.7
 Identities = 22/70 (31%), Positives = 28/70 (40%), Gaps = 2/70 (2%)
 Frame = -1

Query: 467 SIYKLH*FGTLTTQLARYNNFTXTGTRFHDETENTIASTTYSETSDKLVS*RFGLG--DS 294
           S+Y    +   T+ LA+YN             E  I+ST  S      V  R  LG    
Sbjct: 296 SVYSTMAYAEATSNLAKYNTIAFGNCLDEKFEEEIISSTARSFFLGDEVKKRLLLGAYSL 355

Query: 293 AKATSSHLFS 264
           A+  SS LFS
Sbjct: 356 ARMNSSDLFS 365


>SPBPB2B2.12c |||UDP-glucose 4-epimerase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 713

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = +3

Query: 432 GQRAKSMKFVDGLMIHSGDPCNDYVKLL 515
           G+R K + F D    H G P  DY+ ++
Sbjct: 218 GRREKLLVFGDDYDSHDGTPIRDYIHVV 245


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,466,109
Number of Sequences: 5004
Number of extensions: 47615
Number of successful extensions: 106
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 102
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 105
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 273658928
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)