Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10805
         (620 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1220 - 24966169-24966327,24966421-24966552,24966639-249666...   174   5e-44
05_02_0069 - 6324082-6324495                                           31   0.74 
02_02_0343 + 9163976-9165220                                           30   1.7  
10_02_0192 + 6517985-6518348,6518647-6518699,6519984-6520021,652...    29   3.9  
01_01_1234 - 10007446-10007940,10008030-10008125,10008980-100092...    29   3.9  
08_01_0004 + 39265-39440,39545-39652,41955-43528,43650-43996,440...    28   5.2  
08_01_0346 - 3063440-3064189                                           28   6.9  
05_04_0322 + 20239793-20240127,20240176-20240728,20241317-202414...    27   9.1  
01_06_0293 - 28254673-28254878,28255189-28255306,28255767-282559...    27   9.1  

>07_03_1220 -
           24966169-24966327,24966421-24966552,24966639-24966693,
           24967496-24967667,24967771-24967918,24968015-24968050
          Length = 233

 Score =  174 bits (423), Expect = 5e-44
 Identities = 86/122 (70%), Positives = 93/122 (76%)
 Frame = +3

Query: 255 ELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIMESGARGCEVVVSGKLRG 434
           ELYAEKV  RGLCAIAQAESLRYKL+GGLAVRRACYGVLRF+MESGA+GCEV+VSGKLR 
Sbjct: 87  ELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFVMESGAKGCEVIVSGKLRA 146

Query: 435 QRAKSMKFVDGLMIHSGDPCNDYVKLLPDMCFSDKEY*AIKVKIMLPWDQQGKNGPKKPQ 614
           QRAKSMKF DG MI SG P N Y+          +    IKVKIML WD +GK GP  P 
Sbjct: 147 QRAKSMKFKDGYMISSGYPVNLYIDSAVRHVLLRQGVLGIKVKIMLDWDPKGKQGPMTPL 206

Query: 615 PD 620
           PD
Sbjct: 207 PD 208



 Score =  141 bits (342), Expect = 4e-34
 Identities = 70/80 (87%), Positives = 73/80 (91%)
 Frame = +1

Query: 16  ISKKRKFVGDGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGR 195
           ISKKRKFV DGVF AELNE LTRELAEDGYSGVEVRVTP+R+EIII ATRTQ+VLGEKGR
Sbjct: 7   ISKKRKFVADGVFFAELNEMLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLGEKGR 66

Query: 196 RIRELTSVVQKRFNIPEQSV 255
           RIRELTSVVQKRFN PE  V
Sbjct: 67  RIRELTSVVQKRFNFPENGV 86


>05_02_0069 - 6324082-6324495
          Length = 137

 Score = 31.1 bits (67), Expect = 0.74
 Identities = 14/35 (40%), Positives = 20/35 (57%)
 Frame = -1

Query: 308 GLGDSAKATSSHLFSIQFTDCSGMLNRFCTTEVSS 204
           GLG S   T++HL +I  + C G L R C+  V +
Sbjct: 37  GLGYSQLLTTAHLGAISSSSCGGRLGRQCSAAVGA 71


>02_02_0343 + 9163976-9165220
          Length = 414

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 13/36 (36%), Positives = 22/36 (61%)
 Frame = -1

Query: 278 SHLFSIQFTDCSGMLNRFCTTEVSSRILRPFSPSTL 171
           S L S++ +DC  M +R+C  +  +R  +P  PS+L
Sbjct: 163 SSLQSLRISDCGRMFSRWCMVDAGARTSKPL-PSSL 197


>10_02_0192 +
           6517985-6518348,6518647-6518699,6519984-6520021,
           6522332-6522717,6523752-6523822,6524620-6524732,
           6525019-6525337,6525576-6525886,6526493-6527069,
           6530483-6530538,6531643-6532126
          Length = 923

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 14/36 (38%), Positives = 17/36 (47%), Gaps = 1/36 (2%)
 Frame = +2

Query: 77  SLGSWPRTAT-PAWKCGSLPSARRSLLWPPGHRVCS 181
           ++ SWPR    P W C S    RR L   P  R C+
Sbjct: 10  AVSSWPRLPRLPPWPCASHAQRRRVLRLLPPRRRCA 45


>01_01_1234 -
           10007446-10007940,10008030-10008125,10008980-10009253,
           10009381-10009682,10010078-10010123,10010319-10010368,
           10011124-10011268,10012051-10012229,10012327-10012485,
           10012636-10012887,10012972-10013097,10013197-10013525,
           10014183-10014252
          Length = 840

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 11/34 (32%), Positives = 15/34 (44%)
 Frame = -3

Query: 141 RADGSDPHFHAGVAVLGQLPSEELIEFCLENPIS 40
           R DG +PH  A   + G    ++    CL  P S
Sbjct: 768 RQDGGEPHLQAAAVLAGSRGGDDAAHACLRRPSS 801


>08_01_0004 +
           39265-39440,39545-39652,41955-43528,43650-43996,
           44090-44322,45308-45412,45531-45705,46443-46658
          Length = 977

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 13/39 (33%), Positives = 22/39 (56%)
 Frame = -1

Query: 293 AKATSSHLFSIQFTDCSGMLNRFCTTEVSSRILRPFSPS 177
           ++ + +H F I   + S   +  C+  VS+R+LRPF  S
Sbjct: 740 SRKSMNHSFGIGGGETSNTGSSLCSHPVSARLLRPFEQS 778


>08_01_0346 - 3063440-3064189
          Length = 249

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 13/23 (56%), Positives = 14/23 (60%)
 Frame = +3

Query: 306 AESLRYKLIGGLAVRRACYGVLR 374
           A S    L+GG A   ACYGVLR
Sbjct: 221 ARSAARVLLGGWAAMAACYGVLR 243


>05_04_0322 +
           20239793-20240127,20240176-20240728,20241317-20241425,
           20244456-20244723,20244943-20245197,20245594-20246539
          Length = 821

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 13/33 (39%), Positives = 16/33 (48%), Gaps = 1/33 (3%)
 Frame = +2

Query: 272 GGYSWPLRYRPG-RISKIQAYRRSRCTSCLLWC 367
           G  SW  RY+    ISK   Y   RC  C++ C
Sbjct: 665 GALSWSRRYQIAIGISKGLPYLHERCRDCIIHC 697


>01_06_0293 - 28254673-28254878,28255189-28255306,28255767-28255961,
            28256701-28256800,28256887-28256972,28257078-28257239,
            28257965-28258101,28258233-28258281,28258688-28258746,
            28258862-28258896,28259384-28259433,28260173-28260332,
            28260898-28260963,28261065-28261162,28261649-28261696,
            28262114-28262242,28262667-28262769,28262858-28262954,
            28263181-28263241,28263659-28263740,28263845-28263962,
            28264039-28266325
          Length = 1481

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 16/38 (42%), Positives = 21/38 (55%)
 Frame = -1

Query: 260  QFTDCSGMLNRFCTTEVSSRILRPFSPSTLCVLVAIIM 147
            +F D  GM+   C+ EVSS IL   +   +CV V  IM
Sbjct: 1059 RFPDLVGMIKELCSIEVSSFILD--AEVDICVFVFDIM 1094


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,736,726
Number of Sequences: 37544
Number of extensions: 338820
Number of successful extensions: 941
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 912
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 939
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1502076244
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)