Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV10805
(620 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_29492| Best HMM Match : Ribosomal_S3_C (HMM E-Value=1.8e-28) 197 5e-51
SB_26915| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.7
SB_50657| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.0
SB_55955| Best HMM Match : Histone (HMM E-Value=5.29971e-42) 27 9.3
SB_55460| Best HMM Match : Histone (HMM E-Value=5.29971e-42) 27 9.3
SB_53830| Best HMM Match : Histone (HMM E-Value=5.29971e-42) 27 9.3
SB_51993| Best HMM Match : Histone (HMM E-Value=5.29971e-42) 27 9.3
SB_48637| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.3
SB_44589| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.3
SB_37074| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.3
SB_35876| Best HMM Match : Histone (HMM E-Value=5.1) 27 9.3
SB_30057| Best HMM Match : Histone (HMM E-Value=5.29971e-42) 27 9.3
SB_29024| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.3
SB_23531| Best HMM Match : Histone (HMM E-Value=8.9e-09) 27 9.3
SB_21880| Best HMM Match : Histone (HMM E-Value=5.29971e-42) 27 9.3
SB_20370| Best HMM Match : Histone (HMM E-Value=5.29971e-42) 27 9.3
SB_18391| Best HMM Match : Histone (HMM E-Value=5.29971e-42) 27 9.3
SB_17374| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.3
SB_13453| Best HMM Match : Histone (HMM E-Value=5.29971e-42) 27 9.3
SB_8948| Best HMM Match : Histone (HMM E-Value=5.29971e-42) 27 9.3
SB_4426| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.3
SB_3841| Best HMM Match : Histone (HMM E-Value=5.29971e-42) 27 9.3
SB_59571| Best HMM Match : Histone (HMM E-Value=5.29971e-42) 27 9.3
SB_58125| Best HMM Match : Histone (HMM E-Value=5.29971e-42) 27 9.3
SB_57761| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.3
SB_56157| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.3
SB_55483| Best HMM Match : Histone (HMM E-Value=5.29971e-42) 27 9.3
SB_55375| Best HMM Match : Histone (HMM E-Value=9.2e-35) 27 9.3
SB_54709| Best HMM Match : Histone (HMM E-Value=5.29971e-42) 27 9.3
SB_53175| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.3
SB_51431| Best HMM Match : Histone (HMM E-Value=5.29971e-42) 27 9.3
SB_49908| Best HMM Match : Histone (HMM E-Value=5.29971e-42) 27 9.3
SB_48866| Best HMM Match : Histone (HMM E-Value=5.29971e-42) 27 9.3
SB_48698| Best HMM Match : Histone (HMM E-Value=5.29971e-42) 27 9.3
SB_47677| Best HMM Match : Histone (HMM E-Value=5.29971e-42) 27 9.3
SB_45363| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.3
SB_43396| Best HMM Match : Histone (HMM E-Value=5.29971e-42) 27 9.3
SB_42599| Best HMM Match : DUF536 (HMM E-Value=7.2) 27 9.3
SB_38339| Best HMM Match : Histone (HMM E-Value=5.29971e-42) 27 9.3
SB_37823| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.3
SB_33151| Best HMM Match : Histone (HMM E-Value=5.29971e-42) 27 9.3
SB_25703| Best HMM Match : Histone (HMM E-Value=5.29971e-42) 27 9.3
SB_20764| Best HMM Match : Protamine_3 (HMM E-Value=9.6) 27 9.3
SB_19243| Best HMM Match : Histone (HMM E-Value=1e-16) 27 9.3
SB_19242| Best HMM Match : Histone (HMM E-Value=5.29971e-42) 27 9.3
SB_18626| Best HMM Match : Histone (HMM E-Value=5.29971e-42) 27 9.3
SB_17756| Best HMM Match : Histone (HMM E-Value=8.5e-41) 27 9.3
SB_17103| Best HMM Match : Histone (HMM E-Value=0.65) 27 9.3
SB_15200| Best HMM Match : Histone (HMM E-Value=0.22) 27 9.3
SB_14746| Best HMM Match : Histone (HMM E-Value=4.4e-32) 27 9.3
SB_13396| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.3
SB_11832| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.3
SB_7960| Best HMM Match : Histone (HMM E-Value=5.29971e-42) 27 9.3
SB_7640| Best HMM Match : Histone (HMM E-Value=4.80001e-41) 27 9.3
SB_5701| Best HMM Match : Linker_histone (HMM E-Value=5.9e-39) 27 9.3
SB_4579| Best HMM Match : Histone (HMM E-Value=5.29971e-42) 27 9.3
SB_512| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.3
>SB_29492| Best HMM Match : Ribosomal_S3_C (HMM E-Value=1.8e-28)
Length = 240
Score = 197 bits (481), Expect = 5e-51
Identities = 95/122 (77%), Positives = 101/122 (82%)
Frame = +3
Query: 255 ELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIMESGARGCEVVVSGKLRG 434
ELYAEKVATRGLCAIAQ ESLRYKLIGGLAVRRACYGVLRFIMESGA+GCEVVVSGKLRG
Sbjct: 85 ELYAEKVATRGLCAIAQCESLRYKLIGGLAVRRACYGVLRFIMESGAKGCEVVVSGKLRG 144
Query: 435 QRAKSMKFVDGLMIHSGDPCNDYVKLLPDMCFSDKEY*AIKVKIMLPWDQQGKNGPKKPQ 614
QRAKSMKFVDGLM+H+G+P YV + + IKVKIMLPWD GK GPKKP
Sbjct: 145 QRAKSMKFVDGLMVHAGEPTTHYVDTAVRHVYLRQGVLGIKVKIMLPWDPTGKTGPKKPL 204
Query: 615 PD 620
PD
Sbjct: 205 PD 206
Score = 146 bits (355), Expect = 1e-35
Identities = 72/80 (90%), Positives = 76/80 (95%)
Frame = +1
Query: 16 ISKKRKFVGDGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGR 195
ISKKRKFV DG+FKAELNEFLTRELAEDGYSGVEVRVTPIR+EIII+ATRTQ+VLGEKGR
Sbjct: 5 ISKKRKFVADGLFKAELNEFLTRELAEDGYSGVEVRVTPIRTEIIILATRTQNVLGEKGR 64
Query: 196 RIRELTSVVQKRFNIPEQSV 255
RIRELTSVVQKRF PE SV
Sbjct: 65 RIRELTSVVQKRFGFPEGSV 84
>SB_26915| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3934
Score = 29.9 bits (64), Expect = 1.7
Identities = 17/62 (27%), Positives = 30/62 (48%), Gaps = 1/62 (1%)
Frame = +1
Query: 82 RELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKG-RRIRELTSVVQKRFNIPEQSVN 258
R+ AE+ ++ I SE+++MA R EK IR V + +N ++ ++
Sbjct: 2588 RDEAEEKSIEADIEKNLIESEVVVMALRNSIKTTEKSLDLIRPEAKVTEHEYNNCQRDID 2647
Query: 259 CM 264
CM
Sbjct: 2648 CM 2649
>SB_50657| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 442
Score = 29.1 bits (62), Expect = 3.0
Identities = 17/58 (29%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
Frame = +2
Query: 53 SRQNSMSSSLGSWPRTATPAWKCGSLPSARRSLLWPPGH-RVCSERKDAESVSSLP*Y 223
+R+ ++ +L + P T +CG + +AR L+ P H R + V SLP Y
Sbjct: 272 TRKMMLTRALSTTPSTTPELRRCGGVLTAREGLIMSPNHPRPYPSDTHCKWVISLPSY 329
>SB_55955| Best HMM Match : Histone (HMM E-Value=5.29971e-42)
Length = 136
Score = 27.5 bits (58), Expect = 9.3
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = +2
Query: 272 GGYSWPLRYRPGRISKIQAYRRSRCTSCLLWCSPF 376
GG P RYRPG ++ + R + T L+ PF
Sbjct: 34 GGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPF 68
>SB_55460| Best HMM Match : Histone (HMM E-Value=5.29971e-42)
Length = 136
Score = 27.5 bits (58), Expect = 9.3
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = +2
Query: 272 GGYSWPLRYRPGRISKIQAYRRSRCTSCLLWCSPF 376
GG P RYRPG ++ + R + T L+ PF
Sbjct: 34 GGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPF 68
>SB_53830| Best HMM Match : Histone (HMM E-Value=5.29971e-42)
Length = 136
Score = 27.5 bits (58), Expect = 9.3
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = +2
Query: 272 GGYSWPLRYRPGRISKIQAYRRSRCTSCLLWCSPF 376
GG P RYRPG ++ + R + T L+ PF
Sbjct: 34 GGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPF 68
>SB_51993| Best HMM Match : Histone (HMM E-Value=5.29971e-42)
Length = 136
Score = 27.5 bits (58), Expect = 9.3
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = +2
Query: 272 GGYSWPLRYRPGRISKIQAYRRSRCTSCLLWCSPF 376
GG P RYRPG ++ + R + T L+ PF
Sbjct: 34 GGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPF 68
>SB_48637| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 136
Score = 27.5 bits (58), Expect = 9.3
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = +2
Query: 272 GGYSWPLRYRPGRISKIQAYRRSRCTSCLLWCSPF 376
GG P RYRPG ++ + R + T L+ PF
Sbjct: 34 GGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPF 68
>SB_44589| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 136
Score = 27.5 bits (58), Expect = 9.3
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = +2
Query: 272 GGYSWPLRYRPGRISKIQAYRRSRCTSCLLWCSPF 376
GG P RYRPG ++ + R + T L+ PF
Sbjct: 34 GGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPF 68
>SB_37074| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 97
Score = 27.5 bits (58), Expect = 9.3
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = +2
Query: 272 GGYSWPLRYRPGRISKIQAYRRSRCTSCLLWCSPF 376
GG P RYRPG ++ + R + T L+ PF
Sbjct: 34 GGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPF 68
>SB_35876| Best HMM Match : Histone (HMM E-Value=5.1)
Length = 157
Score = 27.5 bits (58), Expect = 9.3
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = +2
Query: 272 GGYSWPLRYRPGRISKIQAYRRSRCTSCLLWCSPF 376
GG P RYRPG ++ + R + T L+ PF
Sbjct: 34 GGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPF 68
>SB_30057| Best HMM Match : Histone (HMM E-Value=5.29971e-42)
Length = 260
Score = 27.5 bits (58), Expect = 9.3
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = +2
Query: 272 GGYSWPLRYRPGRISKIQAYRRSRCTSCLLWCSPF 376
GG P RYRPG ++ + R + T L+ PF
Sbjct: 158 GGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPF 192
>SB_29024| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 998
Score = 27.5 bits (58), Expect = 9.3
Identities = 14/43 (32%), Positives = 21/43 (48%)
Frame = -3
Query: 246 LWNVESLLYYGSELTDSASFLSEHTLCPGGHNNDLRADGSDPH 118
LWN++ + + F + H+ C GG N D A GS+ H
Sbjct: 186 LWNIKDRVLERKYQGVTQGFYTIHS-CFGGVNQDFLASGSEDH 227
>SB_23531| Best HMM Match : Histone (HMM E-Value=8.9e-09)
Length = 110
Score = 27.5 bits (58), Expect = 9.3
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = +2
Query: 272 GGYSWPLRYRPGRISKIQAYRRSRCTSCLLWCSPF 376
GG P RYRPG ++ + R + T L+ PF
Sbjct: 34 GGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPF 68
>SB_21880| Best HMM Match : Histone (HMM E-Value=5.29971e-42)
Length = 136
Score = 27.5 bits (58), Expect = 9.3
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = +2
Query: 272 GGYSWPLRYRPGRISKIQAYRRSRCTSCLLWCSPF 376
GG P RYRPG ++ + R + T L+ PF
Sbjct: 34 GGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPF 68
>SB_20370| Best HMM Match : Histone (HMM E-Value=5.29971e-42)
Length = 136
Score = 27.5 bits (58), Expect = 9.3
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = +2
Query: 272 GGYSWPLRYRPGRISKIQAYRRSRCTSCLLWCSPF 376
GG P RYRPG ++ + R + T L+ PF
Sbjct: 34 GGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPF 68
>SB_18391| Best HMM Match : Histone (HMM E-Value=5.29971e-42)
Length = 136
Score = 27.5 bits (58), Expect = 9.3
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = +2
Query: 272 GGYSWPLRYRPGRISKIQAYRRSRCTSCLLWCSPF 376
GG P RYRPG ++ + R + T L+ PF
Sbjct: 34 GGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPF 68
>SB_17374| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 136
Score = 27.5 bits (58), Expect = 9.3
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = +2
Query: 272 GGYSWPLRYRPGRISKIQAYRRSRCTSCLLWCSPF 376
GG P RYRPG ++ + R + T L+ PF
Sbjct: 34 GGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPF 68
>SB_13453| Best HMM Match : Histone (HMM E-Value=5.29971e-42)
Length = 136
Score = 27.5 bits (58), Expect = 9.3
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = +2
Query: 272 GGYSWPLRYRPGRISKIQAYRRSRCTSCLLWCSPF 376
GG P RYRPG ++ + R + T L+ PF
Sbjct: 34 GGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPF 68
>SB_8948| Best HMM Match : Histone (HMM E-Value=5.29971e-42)
Length = 136
Score = 27.5 bits (58), Expect = 9.3
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = +2
Query: 272 GGYSWPLRYRPGRISKIQAYRRSRCTSCLLWCSPF 376
GG P RYRPG ++ + R + T L+ PF
Sbjct: 34 GGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPF 68
>SB_4426| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 136
Score = 27.5 bits (58), Expect = 9.3
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = +2
Query: 272 GGYSWPLRYRPGRISKIQAYRRSRCTSCLLWCSPF 376
GG P RYRPG ++ + R + T L+ PF
Sbjct: 34 GGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPF 68
>SB_3841| Best HMM Match : Histone (HMM E-Value=5.29971e-42)
Length = 136
Score = 27.5 bits (58), Expect = 9.3
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = +2
Query: 272 GGYSWPLRYRPGRISKIQAYRRSRCTSCLLWCSPF 376
GG P RYRPG ++ + R + T L+ PF
Sbjct: 34 GGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPF 68
>SB_59571| Best HMM Match : Histone (HMM E-Value=5.29971e-42)
Length = 136
Score = 27.5 bits (58), Expect = 9.3
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = +2
Query: 272 GGYSWPLRYRPGRISKIQAYRRSRCTSCLLWCSPF 376
GG P RYRPG ++ + R + T L+ PF
Sbjct: 34 GGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPF 68
>SB_58125| Best HMM Match : Histone (HMM E-Value=5.29971e-42)
Length = 136
Score = 27.5 bits (58), Expect = 9.3
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = +2
Query: 272 GGYSWPLRYRPGRISKIQAYRRSRCTSCLLWCSPF 376
GG P RYRPG ++ + R + T L+ PF
Sbjct: 34 GGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPF 68
>SB_57761| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 136
Score = 27.5 bits (58), Expect = 9.3
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = +2
Query: 272 GGYSWPLRYRPGRISKIQAYRRSRCTSCLLWCSPF 376
GG P RYRPG ++ + R + T L+ PF
Sbjct: 34 GGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPF 68
>SB_56157| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 136
Score = 27.5 bits (58), Expect = 9.3
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = +2
Query: 272 GGYSWPLRYRPGRISKIQAYRRSRCTSCLLWCSPF 376
GG P RYRPG ++ + R + T L+ PF
Sbjct: 34 GGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPF 68
>SB_55483| Best HMM Match : Histone (HMM E-Value=5.29971e-42)
Length = 136
Score = 27.5 bits (58), Expect = 9.3
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = +2
Query: 272 GGYSWPLRYRPGRISKIQAYRRSRCTSCLLWCSPF 376
GG P RYRPG ++ + R + T L+ PF
Sbjct: 34 GGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPF 68
>SB_55375| Best HMM Match : Histone (HMM E-Value=9.2e-35)
Length = 136
Score = 27.5 bits (58), Expect = 9.3
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = +2
Query: 272 GGYSWPLRYRPGRISKIQAYRRSRCTSCLLWCSPF 376
GG P RYRPG ++ + R + T L+ PF
Sbjct: 34 GGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPF 68
>SB_54709| Best HMM Match : Histone (HMM E-Value=5.29971e-42)
Length = 136
Score = 27.5 bits (58), Expect = 9.3
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = +2
Query: 272 GGYSWPLRYRPGRISKIQAYRRSRCTSCLLWCSPF 376
GG P RYRPG ++ + R + T L+ PF
Sbjct: 34 GGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPF 68
>SB_53175| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 136
Score = 27.5 bits (58), Expect = 9.3
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = +2
Query: 272 GGYSWPLRYRPGRISKIQAYRRSRCTSCLLWCSPF 376
GG P RYRPG ++ + R + T L+ PF
Sbjct: 34 GGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPF 68
>SB_51431| Best HMM Match : Histone (HMM E-Value=5.29971e-42)
Length = 136
Score = 27.5 bits (58), Expect = 9.3
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = +2
Query: 272 GGYSWPLRYRPGRISKIQAYRRSRCTSCLLWCSPF 376
GG P RYRPG ++ + R + T L+ PF
Sbjct: 34 GGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPF 68
>SB_49908| Best HMM Match : Histone (HMM E-Value=5.29971e-42)
Length = 136
Score = 27.5 bits (58), Expect = 9.3
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = +2
Query: 272 GGYSWPLRYRPGRISKIQAYRRSRCTSCLLWCSPF 376
GG P RYRPG ++ + R + T L+ PF
Sbjct: 34 GGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPF 68
>SB_48866| Best HMM Match : Histone (HMM E-Value=5.29971e-42)
Length = 205
Score = 27.5 bits (58), Expect = 9.3
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = +2
Query: 272 GGYSWPLRYRPGRISKIQAYRRSRCTSCLLWCSPF 376
GG P RYRPG ++ + R + T L+ PF
Sbjct: 103 GGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPF 137
>SB_48698| Best HMM Match : Histone (HMM E-Value=5.29971e-42)
Length = 136
Score = 27.5 bits (58), Expect = 9.3
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = +2
Query: 272 GGYSWPLRYRPGRISKIQAYRRSRCTSCLLWCSPF 376
GG P RYRPG ++ + R + T L+ PF
Sbjct: 34 GGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPF 68
>SB_47677| Best HMM Match : Histone (HMM E-Value=5.29971e-42)
Length = 136
Score = 27.5 bits (58), Expect = 9.3
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = +2
Query: 272 GGYSWPLRYRPGRISKIQAYRRSRCTSCLLWCSPF 376
GG P RYRPG ++ + R + T L+ PF
Sbjct: 34 GGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPF 68
>SB_45363| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 136
Score = 27.5 bits (58), Expect = 9.3
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = +2
Query: 272 GGYSWPLRYRPGRISKIQAYRRSRCTSCLLWCSPF 376
GG P RYRPG ++ + R + T L+ PF
Sbjct: 34 GGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPF 68
>SB_43396| Best HMM Match : Histone (HMM E-Value=5.29971e-42)
Length = 131
Score = 27.5 bits (58), Expect = 9.3
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = +2
Query: 272 GGYSWPLRYRPGRISKIQAYRRSRCTSCLLWCSPF 376
GG P RYRPG ++ + R + T L+ PF
Sbjct: 29 GGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPF 63
>SB_42599| Best HMM Match : DUF536 (HMM E-Value=7.2)
Length = 120
Score = 27.5 bits (58), Expect = 9.3
Identities = 18/63 (28%), Positives = 37/63 (58%), Gaps = 1/63 (1%)
Frame = +1
Query: 61 ELNEFLTRELAE-DGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIRELTSVVQKRFN 237
E+ E + + +AE +G SG EV+ ++ + ++ +TQ E ++ +EL + +KR N
Sbjct: 20 EVIEVVNKLIAEGEGESGNEVKENKVKKKPSVIK-QTQ----EDEKKTKELEELKEKRIN 74
Query: 238 IPE 246
+P+
Sbjct: 75 LPQ 77
>SB_38339| Best HMM Match : Histone (HMM E-Value=5.29971e-42)
Length = 136
Score = 27.5 bits (58), Expect = 9.3
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = +2
Query: 272 GGYSWPLRYRPGRISKIQAYRRSRCTSCLLWCSPF 376
GG P RYRPG ++ + R + T L+ PF
Sbjct: 34 GGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPF 68
>SB_37823| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 423
Score = 27.5 bits (58), Expect = 9.3
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = -3
Query: 288 GHE*PPFQHTIHRLLWNVESLLYYGS 211
GH ++H RL WN+E L +Y S
Sbjct: 263 GHHVGDWEHVTIRLNWNMEPLQFYAS 288
>SB_33151| Best HMM Match : Histone (HMM E-Value=5.29971e-42)
Length = 136
Score = 27.5 bits (58), Expect = 9.3
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = +2
Query: 272 GGYSWPLRYRPGRISKIQAYRRSRCTSCLLWCSPF 376
GG P RYRPG ++ + R + T L+ PF
Sbjct: 34 GGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPF 68
>SB_25703| Best HMM Match : Histone (HMM E-Value=5.29971e-42)
Length = 136
Score = 27.5 bits (58), Expect = 9.3
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = +2
Query: 272 GGYSWPLRYRPGRISKIQAYRRSRCTSCLLWCSPF 376
GG P RYRPG ++ + R + T L+ PF
Sbjct: 34 GGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPF 68
>SB_20764| Best HMM Match : Protamine_3 (HMM E-Value=9.6)
Length = 68
Score = 27.5 bits (58), Expect = 9.3
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = +2
Query: 272 GGYSWPLRYRPGRISKIQAYRRSRCTSCLLWCSPF 376
GG P RYRPG ++ + R + T L+ PF
Sbjct: 34 GGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPF 68
>SB_19243| Best HMM Match : Histone (HMM E-Value=1e-16)
Length = 117
Score = 27.5 bits (58), Expect = 9.3
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = +2
Query: 272 GGYSWPLRYRPGRISKIQAYRRSRCTSCLLWCSPF 376
GG P RYRPG ++ + R + T L+ PF
Sbjct: 34 GGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPF 68
>SB_19242| Best HMM Match : Histone (HMM E-Value=5.29971e-42)
Length = 136
Score = 27.5 bits (58), Expect = 9.3
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = +2
Query: 272 GGYSWPLRYRPGRISKIQAYRRSRCTSCLLWCSPF 376
GG P RYRPG ++ + R + T L+ PF
Sbjct: 34 GGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPF 68
>SB_18626| Best HMM Match : Histone (HMM E-Value=5.29971e-42)
Length = 136
Score = 27.5 bits (58), Expect = 9.3
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = +2
Query: 272 GGYSWPLRYRPGRISKIQAYRRSRCTSCLLWCSPF 376
GG P RYRPG ++ + R + T L+ PF
Sbjct: 34 GGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPF 68
>SB_17756| Best HMM Match : Histone (HMM E-Value=8.5e-41)
Length = 136
Score = 27.5 bits (58), Expect = 9.3
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = +2
Query: 272 GGYSWPLRYRPGRISKIQAYRRSRCTSCLLWCSPF 376
GG P RYRPG ++ + R + T L+ PF
Sbjct: 34 GGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPF 68
>SB_17103| Best HMM Match : Histone (HMM E-Value=0.65)
Length = 97
Score = 27.5 bits (58), Expect = 9.3
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = +2
Query: 272 GGYSWPLRYRPGRISKIQAYRRSRCTSCLLWCSPF 376
GG P RYRPG ++ + R + T L+ PF
Sbjct: 34 GGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPF 68
>SB_15200| Best HMM Match : Histone (HMM E-Value=0.22)
Length = 97
Score = 27.5 bits (58), Expect = 9.3
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = +2
Query: 272 GGYSWPLRYRPGRISKIQAYRRSRCTSCLLWCSPF 376
GG P RYRPG ++ + R + T L+ PF
Sbjct: 34 GGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPF 68
>SB_14746| Best HMM Match : Histone (HMM E-Value=4.4e-32)
Length = 162
Score = 27.5 bits (58), Expect = 9.3
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = +2
Query: 272 GGYSWPLRYRPGRISKIQAYRRSRCTSCLLWCSPF 376
GG P RYRPG ++ + R + T L+ PF
Sbjct: 34 GGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPF 68
>SB_13396| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 136
Score = 27.5 bits (58), Expect = 9.3
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = +2
Query: 272 GGYSWPLRYRPGRISKIQAYRRSRCTSCLLWCSPF 376
GG P RYRPG ++ + R + T L+ PF
Sbjct: 34 GGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPF 68
>SB_11832| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 493
Score = 27.5 bits (58), Expect = 9.3
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = +2
Query: 272 GGYSWPLRYRPGRISKIQAYRRSRCTSCLLWCSPF 376
GG P RYRPG ++ + R + T L+ PF
Sbjct: 34 GGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPF 68
>SB_7960| Best HMM Match : Histone (HMM E-Value=5.29971e-42)
Length = 136
Score = 27.5 bits (58), Expect = 9.3
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = +2
Query: 272 GGYSWPLRYRPGRISKIQAYRRSRCTSCLLWCSPF 376
GG P RYRPG ++ + R + T L+ PF
Sbjct: 34 GGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPF 68
>SB_7640| Best HMM Match : Histone (HMM E-Value=4.80001e-41)
Length = 136
Score = 27.5 bits (58), Expect = 9.3
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = +2
Query: 272 GGYSWPLRYRPGRISKIQAYRRSRCTSCLLWCSPF 376
GG P RYRPG ++ + R + T L+ PF
Sbjct: 34 GGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPF 68
>SB_5701| Best HMM Match : Linker_histone (HMM E-Value=5.9e-39)
Length = 370
Score = 27.5 bits (58), Expect = 9.3
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = +2
Query: 272 GGYSWPLRYRPGRISKIQAYRRSRCTSCLLWCSPF 376
GG P RYRPG ++ + R + T L+ PF
Sbjct: 34 GGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPF 68
>SB_4579| Best HMM Match : Histone (HMM E-Value=5.29971e-42)
Length = 136
Score = 27.5 bits (58), Expect = 9.3
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = +2
Query: 272 GGYSWPLRYRPGRISKIQAYRRSRCTSCLLWCSPF 376
GG P RYRPG ++ + R + T L+ PF
Sbjct: 34 GGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPF 68
>SB_512| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 117
Score = 27.5 bits (58), Expect = 9.3
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = +2
Query: 272 GGYSWPLRYRPGRISKIQAYRRSRCTSCLLWCSPF 376
GG P RYRPG ++ + R + T L+ PF
Sbjct: 34 GGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPF 68
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,068,179
Number of Sequences: 59808
Number of extensions: 374018
Number of successful extensions: 1059
Number of sequences better than 10.0: 57
Number of HSP's better than 10.0 without gapping: 970
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1055
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1536271375
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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