Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV10805
(620 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U39851-9|AAF99870.1| 247|Caenorhabditis elegans Ribosomal prote... 182 2e-46
Z34802-8|CAH10787.1| 704|Caenorhabditis elegans Hypothetical pr... 30 1.2
Z34802-7|CAA84338.2| 828|Caenorhabditis elegans Hypothetical pr... 30 1.2
Z48178-3|CAC42246.1| 1553|Caenorhabditis elegans Hypothetical pr... 29 2.7
Z48178-2|CAA88201.1| 1551|Caenorhabditis elegans Hypothetical pr... 29 2.7
U41105-12|AAA82406.1| 556|Caenorhabditis elegans Hypothetical p... 29 2.7
Z93388-9|CAB07653.1| 136|Caenorhabditis elegans Hypothetical pr... 29 3.5
Z83245-7|CAB05834.1| 136|Caenorhabditis elegans Hypothetical pr... 29 3.5
Z83245-3|CAB05833.1| 136|Caenorhabditis elegans Hypothetical pr... 29 3.5
Z83245-2|CAB05831.1| 136|Caenorhabditis elegans Hypothetical pr... 29 3.5
Z82271-1|CAB05209.1| 136|Caenorhabditis elegans Hypothetical pr... 29 3.5
Z81495-3|CAB04057.1| 136|Caenorhabditis elegans Hypothetical pr... 29 3.5
Z73102-11|CAA97411.1| 136|Caenorhabditis elegans Hypothetical p... 29 3.5
Z68336-2|CAA92733.1| 136|Caenorhabditis elegans Hypothetical pr... 29 3.5
X15634-2|CAA33644.1| 136|Caenorhabditis elegans Histone protein... 29 3.5
U64845-9|AAC48033.1| 136|Caenorhabditis elegans Histone protein... 29 3.5
U64843-9|AAF98226.1| 136|Caenorhabditis elegans Histone protein... 29 3.5
U64843-4|AAF98231.1| 136|Caenorhabditis elegans Histone protein... 29 3.5
U58750-10|AAB00650.1| 136|Caenorhabditis elegans Histone protei... 29 3.5
AL132862-31|CAB70234.1| 485|Caenorhabditis elegans Hypothetical... 29 3.5
AF304122-1|AAG50235.1| 136|Caenorhabditis elegans histone H3 pr... 29 3.5
AF047656-3|AAC05102.1| 136|Caenorhabditis elegans Histone prote... 29 3.5
AC024696-4|AAK84514.1| 136|Caenorhabditis elegans Histone prote... 29 3.5
Z98866-6|CAB11546.1| 136|Caenorhabditis elegans Hypothetical pr... 27 8.2
Z70718-5|CAA94670.1| 197|Caenorhabditis elegans Hypothetical pr... 27 8.2
U28732-2|AAB04902.1| 136|Caenorhabditis elegans Histone protein... 27 8.2
U23518-8|AAO38654.1| 400|Caenorhabditis elegans Nuclear hormone... 27 8.2
U23518-7|AAO38655.1| 440|Caenorhabditis elegans Nuclear hormone... 27 8.2
AF083234-1|AAD03692.1| 400|Caenorhabditis elegans nuclear recep... 27 8.2
>U39851-9|AAF99870.1| 247|Caenorhabditis elegans Ribosomal protein,
small subunitprotein 3 protein.
Length = 247
Score = 182 bits (443), Expect = 2e-46
Identities = 87/122 (71%), Positives = 100/122 (81%)
Frame = +3
Query: 255 ELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIMESGARGCEVVVSGKLRG 434
ELYAEKV+ RGLCA+AQ ESLRYKL+GGLAVRRACYGVLRFIMESGA+G EV+VSGKLRG
Sbjct: 87 ELYAEKVSNRGLCAVAQCESLRYKLVGGLAVRRACYGVLRFIMESGAQGVEVIVSGKLRG 146
Query: 435 QRAKSMKFVDGLMIHSGDPCNDYVKLLPDMCFSDKEY*AIKVKIMLPWDQQGKNGPKKPQ 614
QRAK+MKFVDGLMIHSG P NDY++ + IKVKIMLP+D +G+NGP+
Sbjct: 147 QRAKAMKFVDGLMIHSGHPVNDYIQQAVRHVQLRQGVIGIKVKIMLPYDPRGQNGPRNAL 206
Query: 615 PD 620
PD
Sbjct: 207 PD 208
Score = 126 bits (304), Expect = 1e-29
Identities = 63/86 (73%), Positives = 73/86 (84%), Gaps = 1/86 (1%)
Frame = +1
Query: 1 MAVN-NISKKRKFVGDGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSV 177
MA N N++KK+K V G+FKAELN FL +ELAEDGYSGVEVR TP R+E+IIMATRTQ+V
Sbjct: 1 MAANQNVTKKKKAVIGGIFKAELNNFLMKELAEDGYSGVEVRSTPARAEVIIMATRTQNV 60
Query: 178 LGEKGRRIRELTSVVQKRFNIPEQSV 255
LGE+GRRI+ELTSVVQKRF E SV
Sbjct: 61 LGERGRRIKELTSVVQKRFGFEEGSV 86
>Z34802-8|CAH10787.1| 704|Caenorhabditis elegans Hypothetical
protein M88.5b protein.
Length = 704
Score = 30.3 bits (65), Expect = 1.2
Identities = 15/57 (26%), Positives = 26/57 (45%)
Frame = +1
Query: 88 LAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIRELTSVVQKRFNIPEQSVN 258
L G G + IR+E+ + ++G+ G+ +REL + IPE+ N
Sbjct: 543 LPSSGMDGDRSHMLRIRTEVSVPTRIIGRIIGKGGQNVRELQRITGAVVKIPEEERN 599
>Z34802-7|CAA84338.2| 828|Caenorhabditis elegans Hypothetical
protein M88.5a protein.
Length = 828
Score = 30.3 bits (65), Expect = 1.2
Identities = 15/57 (26%), Positives = 26/57 (45%)
Frame = +1
Query: 88 LAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIRELTSVVQKRFNIPEQSVN 258
L G G + IR+E+ + ++G+ G+ +REL + IPE+ N
Sbjct: 667 LPSSGMDGDRSHMLRIRTEVSVPTRIIGRIIGKGGQNVRELQRITGAVVKIPEEERN 723
>Z48178-3|CAC42246.1| 1553|Caenorhabditis elegans Hypothetical
protein C05C10.2b protein.
Length = 1553
Score = 29.1 bits (62), Expect = 2.7
Identities = 13/31 (41%), Positives = 16/31 (51%)
Frame = +1
Query: 13 NISKKRKFVGDGVFKAELNEFLTRELAEDGY 105
+I KK F GDG F E E+ +DGY
Sbjct: 892 DIPKKFSFKGDGEFFVSQREVFENEILDDGY 922
>Z48178-2|CAA88201.1| 1551|Caenorhabditis elegans Hypothetical
protein C05C10.2a protein.
Length = 1551
Score = 29.1 bits (62), Expect = 2.7
Identities = 13/31 (41%), Positives = 16/31 (51%)
Frame = +1
Query: 13 NISKKRKFVGDGVFKAELNEFLTRELAEDGY 105
+I KK F GDG F E E+ +DGY
Sbjct: 892 DIPKKFSFKGDGEFFVSQREVFENEILDDGY 922
>U41105-12|AAA82406.1| 556|Caenorhabditis elegans Hypothetical
protein T02G5.12 protein.
Length = 556
Score = 29.1 bits (62), Expect = 2.7
Identities = 15/51 (29%), Positives = 24/51 (47%)
Frame = -1
Query: 374 TENTIASTTYSETSDKLVS*RFGLGDSAKATSSHLFSIQFTDCSGMLNRFC 222
T NTI + +D+ + GLGD +++I T C G++ FC
Sbjct: 395 TANTIGRLIFGVVADQKLPLPAGLGDDTARNRLWMYNISLTIC-GIVTAFC 444
>Z93388-9|CAB07653.1| 136|Caenorhabditis elegans Hypothetical
protein T10C6.13 protein.
Length = 136
Score = 28.7 bits (61), Expect = 3.5
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = +2
Query: 272 GGYSWPLRYRPGRISKIQAYRRSRCTSCLLWCSPF 376
GG P RYRPG ++ + R + T L+ +PF
Sbjct: 34 GGVKKPHRYRPGTVALREIRRYQKSTELLIRRAPF 68
>Z83245-7|CAB05834.1| 136|Caenorhabditis elegans Hypothetical
protein ZK131.7 protein.
Length = 136
Score = 28.7 bits (61), Expect = 3.5
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = +2
Query: 272 GGYSWPLRYRPGRISKIQAYRRSRCTSCLLWCSPF 376
GG P RYRPG ++ + R + T L+ +PF
Sbjct: 34 GGVKKPHRYRPGTVALREIRRYQKSTELLIRRAPF 68
>Z83245-3|CAB05833.1| 136|Caenorhabditis elegans Hypothetical
protein ZK131.3 protein.
Length = 136
Score = 28.7 bits (61), Expect = 3.5
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = +2
Query: 272 GGYSWPLRYRPGRISKIQAYRRSRCTSCLLWCSPF 376
GG P RYRPG ++ + R + T L+ +PF
Sbjct: 34 GGVKKPHRYRPGTVALREIRRYQKSTELLIRRAPF 68
>Z83245-2|CAB05831.1| 136|Caenorhabditis elegans Hypothetical
protein ZK131.2 protein.
Length = 136
Score = 28.7 bits (61), Expect = 3.5
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = +2
Query: 272 GGYSWPLRYRPGRISKIQAYRRSRCTSCLLWCSPF 376
GG P RYRPG ++ + R + T L+ +PF
Sbjct: 34 GGVKKPHRYRPGTVALREIRRYQKSTELLIRRAPF 68
>Z82271-1|CAB05209.1| 136|Caenorhabditis elegans Hypothetical
protein F54E12.1 protein.
Length = 136
Score = 28.7 bits (61), Expect = 3.5
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = +2
Query: 272 GGYSWPLRYRPGRISKIQAYRRSRCTSCLLWCSPF 376
GG P RYRPG ++ + R + T L+ +PF
Sbjct: 34 GGVKKPHRYRPGTVALREIRRYQKSTELLIRRAPF 68
>Z81495-3|CAB04057.1| 136|Caenorhabditis elegans Hypothetical
protein F08G2.3 protein.
Length = 136
Score = 28.7 bits (61), Expect = 3.5
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = +2
Query: 272 GGYSWPLRYRPGRISKIQAYRRSRCTSCLLWCSPF 376
GG P RYRPG ++ + R + T L+ +PF
Sbjct: 34 GGVKKPHRYRPGTVALREIRRYQKSTELLIRRAPF 68
>Z73102-11|CAA97411.1| 136|Caenorhabditis elegans Hypothetical
protein B0035.10 protein.
Length = 136
Score = 28.7 bits (61), Expect = 3.5
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = +2
Query: 272 GGYSWPLRYRPGRISKIQAYRRSRCTSCLLWCSPF 376
GG P RYRPG ++ + R + T L+ +PF
Sbjct: 34 GGVKKPHRYRPGTVALREIRRYQKSTELLIRRAPF 68
>Z68336-2|CAA92733.1| 136|Caenorhabditis elegans Hypothetical
protein F22B3.2 protein.
Length = 136
Score = 28.7 bits (61), Expect = 3.5
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = +2
Query: 272 GGYSWPLRYRPGRISKIQAYRRSRCTSCLLWCSPF 376
GG P RYRPG ++ + R + T L+ +PF
Sbjct: 34 GGVKKPHRYRPGTVALREIRRYQKSTELLIRRAPF 68
>X15634-2|CAA33644.1| 136|Caenorhabditis elegans Histone protein
protein.
Length = 136
Score = 28.7 bits (61), Expect = 3.5
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = +2
Query: 272 GGYSWPLRYRPGRISKIQAYRRSRCTSCLLWCSPF 376
GG P RYRPG ++ + R + T L+ +PF
Sbjct: 34 GGVKKPHRYRPGTVALREIRRYQKSTELLIRRAPF 68
>U64845-9|AAC48033.1| 136|Caenorhabditis elegans Histone protein 6
protein.
Length = 136
Score = 28.7 bits (61), Expect = 3.5
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = +2
Query: 272 GGYSWPLRYRPGRISKIQAYRRSRCTSCLLWCSPF 376
GG P RYRPG ++ + R + T L+ +PF
Sbjct: 34 GGVKKPHRYRPGTVALREIRRYQKSTELLIRRAPF 68
>U64843-9|AAF98226.1| 136|Caenorhabditis elegans Histone protein 17
protein.
Length = 136
Score = 28.7 bits (61), Expect = 3.5
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = +2
Query: 272 GGYSWPLRYRPGRISKIQAYRRSRCTSCLLWCSPF 376
GG P RYRPG ++ + R + T L+ +PF
Sbjct: 34 GGVKKPHRYRPGTVALREIRRYQKSTELLIRRAPF 68
>U64843-4|AAF98231.1| 136|Caenorhabditis elegans Histone protein 27
protein.
Length = 136
Score = 28.7 bits (61), Expect = 3.5
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = +2
Query: 272 GGYSWPLRYRPGRISKIQAYRRSRCTSCLLWCSPF 376
GG P RYRPG ++ + R + T L+ +PF
Sbjct: 34 GGVKKPHRYRPGTVALREIRRYQKSTELLIRRAPF 68
>U58750-10|AAB00650.1| 136|Caenorhabditis elegans Histone protein
59 protein.
Length = 136
Score = 28.7 bits (61), Expect = 3.5
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = +2
Query: 272 GGYSWPLRYRPGRISKIQAYRRSRCTSCLLWCSPF 376
GG P RYRPG ++ + R + T L+ +PF
Sbjct: 34 GGVKKPHRYRPGTVALREIRRYQKSTELLIRRAPF 68
>AL132862-31|CAB70234.1| 485|Caenorhabditis elegans Hypothetical
protein Y73F8A.34a protein.
Length = 485
Score = 28.7 bits (61), Expect = 3.5
Identities = 14/46 (30%), Positives = 24/46 (52%)
Frame = -3
Query: 258 IHRLLWNVESLLYYGSELTDSASFLSEHTLCPGGHNNDLRADGSDP 121
+H+ WN + LL E +D+ FL+E + P +++ A S P
Sbjct: 72 LHKFKWNKDRLLDKFYEHSDTTEFLAEAQVIPKTSSSEEAAGSSAP 117
>AF304122-1|AAG50235.1| 136|Caenorhabditis elegans histone H3
protein.
Length = 136
Score = 28.7 bits (61), Expect = 3.5
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = +2
Query: 272 GGYSWPLRYRPGRISKIQAYRRSRCTSCLLWCSPF 376
GG P RYRPG ++ + R + T L+ +PF
Sbjct: 34 GGVKKPHRYRPGTVALREIRRYQKSTELLIRRAPF 68
>AF047656-3|AAC05102.1| 136|Caenorhabditis elegans Histone protein
32 protein.
Length = 136
Score = 28.7 bits (61), Expect = 3.5
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = +2
Query: 272 GGYSWPLRYRPGRISKIQAYRRSRCTSCLLWCSPF 376
GG P RYRPG ++ + R + T L+ +PF
Sbjct: 34 GGVKKPHRYRPGTVALREIRRYQKSTELLIRRAPF 68
>AC024696-4|AAK84514.1| 136|Caenorhabditis elegans Histone protein
49 protein.
Length = 136
Score = 28.7 bits (61), Expect = 3.5
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = +2
Query: 272 GGYSWPLRYRPGRISKIQAYRRSRCTSCLLWCSPF 376
GG P RYRPG ++ + R + T L+ +PF
Sbjct: 34 GGVKKPHRYRPGTVALREIRRYQKSTELLIRRAPF 68
>Z98866-6|CAB11546.1| 136|Caenorhabditis elegans Hypothetical
protein Y49E10.6 protein.
Length = 136
Score = 27.5 bits (58), Expect = 8.2
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = +2
Query: 272 GGYSWPLRYRPGRISKIQAYRRSRCTSCLLWCSPF 376
GG P RYRPG ++ + R + T L+ PF
Sbjct: 34 GGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPF 68
>Z70718-5|CAA94670.1| 197|Caenorhabditis elegans Hypothetical
protein C04G2.8 protein.
Length = 197
Score = 27.5 bits (58), Expect = 8.2
Identities = 23/86 (26%), Positives = 36/86 (41%)
Frame = +1
Query: 121 RVTPIRSEIIIMATRTQSVLGEKGRRIRELTSVVQKRFNIPEQSVNCMLKRWLLVAFALS 300
R TP+ + +R++S + RR R + +R ++ S + L+V + S
Sbjct: 19 RFTPLAKTKRTVVSRSRSRSASRARRSRSVGRPASRRISVRSVSTHTAKSPSLVVVISPS 78
Query: 301 PRPNL*DTSLSEVSLYVVLAMVFSVS 378
PR TS S V A SVS
Sbjct: 79 PRRRRSSTSRSSRRSVVRSASRGSVS 104
>U28732-2|AAB04902.1| 136|Caenorhabditis elegans Histone protein 71
protein.
Length = 136
Score = 27.5 bits (58), Expect = 8.2
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = +2
Query: 272 GGYSWPLRYRPGRISKIQAYRRSRCTSCLLWCSPF 376
GG P RYRPG ++ + R + T L+ PF
Sbjct: 34 GGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPF 68
>U23518-8|AAO38654.1| 400|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 21, isoform b protein.
Length = 400
Score = 27.5 bits (58), Expect = 8.2
Identities = 15/42 (35%), Positives = 21/42 (50%)
Frame = -1
Query: 296 SAKATSSHLFSIQFTDCSGMLNRFCTTEVSSRILRPFSPSTL 171
S + S +L S++ + C TEVS+ P SPSTL
Sbjct: 60 STSSASPNLVSVEMHPYTNFREVECQTEVSTISSHPTSPSTL 101
>U23518-7|AAO38655.1| 440|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 21, isoform c protein.
Length = 440
Score = 27.5 bits (58), Expect = 8.2
Identities = 15/42 (35%), Positives = 21/42 (50%)
Frame = -1
Query: 296 SAKATSSHLFSIQFTDCSGMLNRFCTTEVSSRILRPFSPSTL 171
S + S +L S++ + C TEVS+ P SPSTL
Sbjct: 100 STSSASPNLVSVEMHPYTNFREVECQTEVSTISSHPTSPSTL 141
>AF083234-1|AAD03692.1| 400|Caenorhabditis elegans nuclear receptor
NHR-21b protein.
Length = 400
Score = 27.5 bits (58), Expect = 8.2
Identities = 15/42 (35%), Positives = 21/42 (50%)
Frame = -1
Query: 296 SAKATSSHLFSIQFTDCSGMLNRFCTTEVSSRILRPFSPSTL 171
S + S +L S++ + C TEVS+ P SPSTL
Sbjct: 60 STSSASPNLVSVEMHPYTNFREVECQTEVSTISSHPTSPSTL 101
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,727,235
Number of Sequences: 27780
Number of extensions: 273011
Number of successful extensions: 735
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 705
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 733
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1353389824
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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