Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10805
         (620 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    26   0.34 
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    26   0.34 
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          23   2.4  
DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    23   3.2  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    22   4.2  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    21   7.3  
DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated...    21   9.7  

>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 25.8 bits (54), Expect = 0.34
 Identities = 16/61 (26%), Positives = 28/61 (45%), Gaps = 1/61 (1%)
 Frame = -1

Query: 509  FDVIIARVSR-VDHESIYKLH*FGTLTTQLARYNNFTXTGTRFHDETENTIASTTYSETS 333
            ++ I+A + R VD   + K     T+ T L +Y N+T     F    +    + TY +T 
Sbjct: 1151 YEPILADMWRSVDEMEVRKTSALTTVLTGLRKYTNYTIQVLAFTRVGDGVPTTVTYCQTE 1210

Query: 332  D 330
            +
Sbjct: 1211 E 1211


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 25.8 bits (54), Expect = 0.34
 Identities = 16/61 (26%), Positives = 28/61 (45%), Gaps = 1/61 (1%)
 Frame = -1

Query: 509  FDVIIARVSR-VDHESIYKLH*FGTLTTQLARYNNFTXTGTRFHDETENTIASTTYSETS 333
            ++ I+A + R VD   + K     T+ T L +Y N+T     F    +    + TY +T 
Sbjct: 1147 YEPILADMWRSVDEMEVRKTSALTTVLTGLRKYTNYTIQVLAFTRVGDGVPTTVTYCQTE 1206

Query: 332  D 330
            +
Sbjct: 1207 E 1207


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 23.0 bits (47), Expect = 2.4
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = -3

Query: 147 DLRADGSDPHFH 112
           ++  DGS PHFH
Sbjct: 621 EISQDGSSPHFH 632


>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 22.6 bits (46), Expect = 3.2
 Identities = 10/24 (41%), Positives = 12/24 (50%)
 Frame = +1

Query: 238 IPEQSVNCMLKRWLLVAFALSPRP 309
           IPE S N  +  W +   A SP P
Sbjct: 373 IPEPSKNPAMGHWQMSCVACSPPP 396


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 22.2 bits (45), Expect = 4.2
 Identities = 8/12 (66%), Positives = 10/12 (83%)
 Frame = +3

Query: 162  QDTECARRERTQ 197
            QD +C R+ERTQ
Sbjct: 1646 QDHDCIRQERTQ 1657


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 21.4 bits (43), Expect = 7.3
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = +3

Query: 135  PLGDHYYGHQDTECARRERT 194
            PL +H Y   D++ +  ERT
Sbjct: 1329 PLSEHIYSSIDSDYSTLERT 1348


>DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 391

 Score = 21.0 bits (42), Expect = 9.7
 Identities = 6/20 (30%), Positives = 15/20 (75%)
 Frame = -1

Query: 215 EVSSRILRPFSPSTLCVLVA 156
           ++   +++ F+PSTL V+++
Sbjct: 198 QIGHHLIQTFAPSTLVVMLS 217


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 163,717
Number of Sequences: 438
Number of extensions: 3002
Number of successful extensions: 9
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18460203
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)