Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV10805
(620 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g31610.1 68415.m03862 40S ribosomal protein S3 (RPS3A) 175 3e-44
At5g35530.1 68418.m04226 40S ribosomal protein S3 (RPS3C) 174 3e-44
At3g53870.1 68416.m05951 40S ribosomal protein S3 (RPS3B) riboso... 171 2e-43
At3g06190.2 68416.m00712 speckle-type POZ protein-related simila... 33 0.15
At3g06190.1 68416.m00711 speckle-type POZ protein-related simila... 33 0.15
At3g59980.1 68416.m06696 tRNA-binding region domain-containing p... 29 1.9
At5g19000.1 68418.m02257 speckle-type POZ protein-related contai... 29 3.3
At4g36190.1 68417.m05149 serine carboxypeptidase S28 family prot... 29 3.3
At3g42060.1 68416.m04315 myosin heavy chain-related 29 3.3
At2g25150.1 68415.m03008 transferase family protein similar to 1... 28 5.7
At2g14920.1 68415.m01697 sulfotransferase family protein similar... 28 5.7
At1g09830.1 68414.m01105 phosphoribosylamine--glycine ligase (PU... 28 5.7
At3g09850.1 68416.m01175 D111/G-patch domain-containing protein ... 27 7.6
>At2g31610.1 68415.m03862 40S ribosomal protein S3 (RPS3A)
Length = 250
Score = 175 bits (425), Expect = 3e-44
Identities = 84/122 (68%), Positives = 93/122 (76%)
Frame = +3
Query: 255 ELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIMESGARGCEVVVSGKLRG 434
ELYAEKV RGLCAIAQAESLRYKL+GGLAVRRACYGVLRF+MESGA+GCEV+VSGKLR
Sbjct: 85 ELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFVMESGAKGCEVIVSGKLRA 144
Query: 435 QRAKSMKFVDGLMIHSGDPCNDYVKLLPDMCFSDKEY*AIKVKIMLPWDQQGKNGPKKPQ 614
RAKSMKF DG M+ SG P +Y+ + IKVKIML WD GK+GPK P
Sbjct: 145 ARAKSMKFKDGYMVSSGQPTKEYIDAAVRHVLLRQGVLGIKVKIMLDWDPTGKSGPKTPL 204
Query: 615 PD 620
PD
Sbjct: 205 PD 206
Score = 136 bits (330), Expect = 8e-33
Identities = 68/80 (85%), Positives = 72/80 (90%)
Frame = +1
Query: 16 ISKKRKFVGDGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGR 195
ISKKRKFV DGVF AELNE LTRELAEDGYSGVEVRVTP+R+EIII ATRTQ+VLGEKGR
Sbjct: 5 ISKKRKFVADGVFYAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLGEKGR 64
Query: 196 RIRELTSVVQKRFNIPEQSV 255
RIRELTS+VQKRF P SV
Sbjct: 65 RIRELTSLVQKRFKFPVDSV 84
>At5g35530.1 68418.m04226 40S ribosomal protein S3 (RPS3C)
Length = 248
Score = 174 bits (424), Expect = 3e-44
Identities = 83/122 (68%), Positives = 93/122 (76%)
Frame = +3
Query: 255 ELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIMESGARGCEVVVSGKLRG 434
ELYAEKVA RGLCAIAQAESLRYKL+GGLAVRRACYGVLRF+MESGA+GCEV+VSGKLR
Sbjct: 85 ELYAEKVANRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFVMESGAKGCEVIVSGKLRA 144
Query: 435 QRAKSMKFVDGLMIHSGDPCNDYVKLLPDMCFSDKEY*AIKVKIMLPWDQQGKNGPKKPQ 614
RAKSMKF DG M+ SG P +Y+ + +KVKIML WD +GK GP P
Sbjct: 145 ARAKSMKFKDGYMVSSGQPTKEYIDAAVRHVLLRQGVLGLKVKIMLDWDPKGKQGPMTPL 204
Query: 615 PD 620
PD
Sbjct: 205 PD 206
Score = 138 bits (334), Expect = 3e-33
Identities = 68/80 (85%), Positives = 73/80 (91%)
Frame = +1
Query: 16 ISKKRKFVGDGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGR 195
ISKKRKFV DGVF AELNE LTRELAEDGYSGVEVRVTP+R+EIII ATRTQ+VLGEKGR
Sbjct: 5 ISKKRKFVADGVFYAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLGEKGR 64
Query: 196 RIRELTSVVQKRFNIPEQSV 255
RIRELTS+VQKRF P+ SV
Sbjct: 65 RIRELTSLVQKRFKFPQDSV 84
>At3g53870.1 68416.m05951 40S ribosomal protein S3 (RPS3B) ribosomal
protein S3a - Xenopus laevis, PIR:R3XL3A
Length = 249
Score = 171 bits (417), Expect = 2e-43
Identities = 82/122 (67%), Positives = 93/122 (76%)
Frame = +3
Query: 255 ELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIMESGARGCEVVVSGKLRG 434
ELYAEKV RGLCAIAQAESLRYKL+GGLAVRRACYGVLRF+MESGA+GCEV+VSGKLR
Sbjct: 85 ELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFVMESGAKGCEVIVSGKLRA 144
Query: 435 QRAKSMKFVDGLMIHSGDPCNDYVKLLPDMCFSDKEY*AIKVKIMLPWDQQGKNGPKKPQ 614
RAKSMKF DG M+ SG P +Y+ + IKVK+ML WD +G +GPK P
Sbjct: 145 ARAKSMKFKDGYMVSSGQPTKEYIDSAVRHVLLRQGVLGIKVKVMLDWDPKGISGPKTPL 204
Query: 615 PD 620
PD
Sbjct: 205 PD 206
Score = 136 bits (330), Expect = 8e-33
Identities = 68/80 (85%), Positives = 72/80 (90%)
Frame = +1
Query: 16 ISKKRKFVGDGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGR 195
ISKKRKFV DGVF AELNE LTRELAEDGYSGVEVRVTP+R+EIII ATRTQ+VLGEKGR
Sbjct: 5 ISKKRKFVADGVFYAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLGEKGR 64
Query: 196 RIRELTSVVQKRFNIPEQSV 255
RIRELTS+VQKRF P SV
Sbjct: 65 RIRELTSLVQKRFKFPVDSV 84
>At3g06190.2 68416.m00712 speckle-type POZ protein-related similar
to SPOP (novel nuclear speckle-type protein)
(SP:O43791) [Homo sapiens]; contains Pfam PF00651 :
BTB/POZ domain; contains Pfam PF00917: MATH domain
Length = 295
Score = 33.1 bits (72), Expect = 0.15
Identities = 15/30 (50%), Positives = 19/30 (63%)
Frame = -3
Query: 213 SELTDSASFLSEHTLCPGGHNNDLRADGSD 124
SEL + + LSEH+L GH +L ADG D
Sbjct: 255 SELLEYVARLSEHSLTSSGHRKELFADGCD 284
>At3g06190.1 68416.m00711 speckle-type POZ protein-related similar
to SPOP (novel nuclear speckle-type protein)
(SP:O43791) [Homo sapiens]; contains Pfam PF00651 :
BTB/POZ domain; contains Pfam PF00917: MATH domain
Length = 406
Score = 33.1 bits (72), Expect = 0.15
Identities = 15/30 (50%), Positives = 19/30 (63%)
Frame = -3
Query: 213 SELTDSASFLSEHTLCPGGHNNDLRADGSD 124
SEL + + LSEH+L GH +L ADG D
Sbjct: 366 SELLEYVARLSEHSLTSSGHRKELFADGCD 395
>At3g59980.1 68416.m06696 tRNA-binding region domain-containing
protein similar to SP|O54873 Multisynthetase complex
auxiliary component p43 [Contains: Endothelial-monocyte
activating polypeptide II (EMAP-II) (Small inducible
cytokine subfamily E member 1)] {Cricetulus griseus};
contains Pfam profile PF01588: Putative tRNA binding
domain
Length = 273
Score = 29.5 bits (63), Expect = 1.9
Identities = 16/62 (25%), Positives = 33/62 (53%)
Frame = +3
Query: 330 IGGLAVRRACYGVLRFIMESGARGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVK 509
IG R C G+++++ +G VVV L+ + + +K G+++ + D ++ V+
Sbjct: 135 IGEAEPRIICSGLVKYVPLDLLQGASVVVLANLKPRNMRGVKSC-GMLLAASDAAHENVE 193
Query: 510 LL 515
LL
Sbjct: 194 LL 195
>At5g19000.1 68418.m02257 speckle-type POZ protein-related contains
Pfam PF00651 : BTB/POZ domain; contains Pfam PF00917:
MATH domain; similar to Speckle-type POZ protein
(SP:O43791) [Homo sapiens]
Length = 442
Score = 28.7 bits (61), Expect = 3.3
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = -3
Query: 213 SELTDSASFLSEHTLCPGGHNNDLRADGSD 124
+EL + LSEH++ GH ++ ADG D
Sbjct: 402 TELLQYVARLSEHSVIVSGHRKEIFADGCD 431
>At4g36190.1 68417.m05149 serine carboxypeptidase S28 family protein
contains Pfam PF05577: Serine carboxypeptidase S28
Length = 493
Score = 28.7 bits (61), Expect = 3.3
Identities = 16/41 (39%), Positives = 20/41 (48%)
Frame = +2
Query: 17 FQRSENLLEMGFSRQNSMSSSLGSWPRTATPAWKCGSLPSA 139
F RS N+ F S S +L +W R P CGSL S+
Sbjct: 161 FNRSSNVENPWFFFGVSYSGALSAWFRLKFPHLTCGSLASS 201
>At3g42060.1 68416.m04315 myosin heavy chain-related
Length = 712
Score = 28.7 bits (61), Expect = 3.3
Identities = 11/21 (52%), Positives = 15/21 (71%)
Frame = +2
Query: 227 SDSTFQSNL*IVC*KGGYSWP 289
SD+TF SNL ++C + SWP
Sbjct: 335 SDNTFLSNLSLLCKRSALSWP 355
>At2g25150.1 68415.m03008 transferase family protein similar to
10-deacetylbaccatin III-10-O-acetyl transferase
[gi:6746554], 2-debenzoyl-7,13-diacetylbaccatin
III-2-O-benzoyl transferase [gi:11559716] from Taxus
cuspidata; contains Pfam transferase family domain
PF00248; contains EST gb:R65039
Length = 461
Score = 27.9 bits (59), Expect = 5.7
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = -3
Query: 144 LRADGSDPHFHAGVAVLGQLPSEELIEF 61
L+ SDP GV V+ +LP + ++EF
Sbjct: 418 LKPSKSDPSMEGGVKVIMKLPRDAMVEF 445
>At2g14920.1 68415.m01697 sulfotransferase family protein similar to
steroid sulfotransferase from [Brassica napus]
GI:3420008, GI:3420004; contains Pfam profile PF00685:
Sulfotransferase domain
Length = 333
Score = 27.9 bits (59), Expect = 5.7
Identities = 14/41 (34%), Positives = 19/41 (46%)
Frame = -3
Query: 285 HE*PPFQHTIHRLLWNVESLLYYGSELTDSASFLSEHTLCP 163
H+ P H H ++ N+E LY S D FLS + P
Sbjct: 100 HQHPLLHHNPHEIVPNLELDLYLKSSKPDLTKFLSSSSSSP 140
>At1g09830.1 68414.m01105 phosphoribosylamine--glycine ligase (PUR2)
Identical to phosphoribosylamine--glycine ligase,
chloroplast [precursor] SP:P52420 from [Arabidopsis
thaliana]
Length = 532
Score = 27.9 bits (59), Expect = 5.7
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = +3
Query: 390 GARGCEVVVSGKLRGQRAKSMKFVDG 467
G+ GC+VVV L G+ A VDG
Sbjct: 273 GSAGCQVVVEEFLEGEEASFFALVDG 298
>At3g09850.1 68416.m01175 D111/G-patch domain-containing protein
contains Pfam profile PF01585: G-patch domain
Length = 781
Score = 27.5 bits (58), Expect = 7.6
Identities = 15/59 (25%), Positives = 29/59 (49%)
Frame = +1
Query: 22 KKRKFVGDGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRR 198
K RK G + KA + E+ ++ GYSG P+ + ++ +S+ G+K ++
Sbjct: 349 KTRKLTGIRLQKASM-EYGKKKTTRSGYSGHGKSTNPLAMDDLMFVKDPRSLSGKKNKK 406
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,237,685
Number of Sequences: 28952
Number of extensions: 262327
Number of successful extensions: 674
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 645
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 668
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1255974912
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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